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25 Open 9 Closed
25 Open 9 Closed
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Issues list

implemenation optimization: boyer-moore-harspool ready
#36 opened Nov 4, 2016 by crmackay
flamegraph and optimization ready
#35 opened Oct 30, 2016 by crmackay 0.0.2
add fastqio in progress
#34 opened Oct 30, 2016 by crmackay 0.0.1
data for paper: ready
#33 opened Oct 30, 2016 by crmackay
5 tasks
0.0.1
add pthreads, concurrency in progress
#32 opened Oct 30, 2016 by crmackay 0.0.1
performance testing
#31 opened Jun 27, 2016 by crmackay
add SIMD support
#29 opened Feb 10, 2016 by crmackay
add four-russians speed up ready
#28 opened Nov 9, 2015 by crmackay
fix alignment algorithm in progress
#27 opened Nov 9, 2015 by crmackay 0.0.1
add to homebrew
#26 opened Oct 21, 2015 by crmackay
add automated testing and deployment
#25 opened Oct 21, 2015 by crmackay
1 of 2 tasks
1
fill and clean up unit tests ready
#24 opened Oct 21, 2015 by crmackay
11 tasks
add deduplication support TODO
#23 opened Oct 21, 2015 by crmackay
plan for optimizing memory management
#21 opened Jul 29, 2015 by crmackay
new semi-global alignment algorithm with incorporation of quality data
#20 opened Jul 2, 2015 by crmackay
1
optimize search algorithm in progress TODO
#17 opened Jun 29, 2015 by crmackay
2 tasks
0.0.1
stdin/stdout pipe support ready
#14 opened Jun 18, 2015 by crmackay
data collection: total reads processed? Backlog in progress TODO
#11 opened Jun 18, 2015 by crmackay
1
unit test: data collection Backlog TODO
#10 opened Jun 18, 2015 by crmackay 0.0.1
add apriori probability calculation option enhancement
#8 opened Jun 11, 2015 by crmackay 0.0.3
draft paper in progress TODO
#6 opened Feb 18, 2015 by crmackay
5 tasks
0.0.1
@crmackay
submit for DOI TODO
#5 opened Feb 18, 2015 by crmackay 0.0.3
@crmackay
add config file parsing Backlog TODO
#4 opened Feb 18, 2015 by crmackay
2 tasks
0.0.3
@crmackay
add command line arguments in progress TODO
#3 opened Feb 18, 2015 by crmackay
5 tasks
0.0.1
@crmackay
Documentation Backlog TODO
#1 opened Feb 18, 2015 by crmackay
3 tasks
0.0.2
@crmackay
ProTip! no:milestone will show everything without a milestone.