Scripts used in the manuscript Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases.
Supplementary files can be found in the supplementary_files folder:
- Supplementary File 1: MaxQuant parameter file example for the tryptic samples from run1
- Supplementary File 2: MSFragger parameter file example for the tryptic samples from run1
- Supplementary File 3: Casanovo config file
- Supplementary File 4: Stitch example config file for h9C12 WT
This repository is still under development, please contact Maria Chernigovskaya, Khang Lê Quý, or Victor Greiff if you have any questions.