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1 parent 3e3a717 commit 262fa48Copy full SHA for 262fa48
.github/workflows/test.yml
@@ -29,10 +29,6 @@ jobs:
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run: |
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brew update-reset
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brew install coreutils
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- - name: metafx unique
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- run: |
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- export PATH=bin:$PATH
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- metafx unique -t 6 -m 6G -k 31 -i test_data/sample_list.txt -w wd_unique
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- name: metafx metafast
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export PATH=bin:$PATH
@@ -61,7 +57,7 @@ jobs:
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export PATH=SPAdes-3.15.5-Linux/bin/:$PATH
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metafx metaspades -t 6 -m 6G -k 31 -i test_data/33* -b1 100 -b2 1000 -l 50 -w wd_metaspades
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- - name: metafx pca
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+ - name: metafx unique & metafx pca
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metafx unique -t 6 -m 6G -k 31 -i test_data/sample_list_train.txt -w wd_unique_pca --kmers-dir wd_metafast/kmer-counter-many/kmers
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