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Fix and prepare wiki
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bin/metafx-modules/feature_analysis.sh

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Original file line numberDiff line numberDiff line change
@@ -119,13 +119,13 @@ fi
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mkdir ${w}
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cmd1="python ${SOFT}/select_samples_by_feature.py --work-dir ${featDir} --feature ${featName} --res-dir ${w} "
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if [[ $relab ]]; then
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cmd+="--board ${relab}"
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cmd1+="--board ${relab}"
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fi
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echo "$cmd1"
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$cmd1
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if [[ $? -eq 0 ]]; then
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echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt` samples were selected"
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echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt | cut -d" " -f1` samples were selected"
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echo "List of samples containing feature '${featName}' saved to ${w}/samples_list_feature_${featName}.txt"
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echo "Nucleotide sequence for feature '${featName}' saved to ${w}/seq_feature_${featName}.fasta"
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comment "Step 1 finished successfully!"

img/examples/bandage_multigraph.png

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