We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
1 parent df2a5af commit d3f86b5Copy full SHA for d3f86b5
bin/metafx-modules/feature_analysis.sh
@@ -119,13 +119,13 @@ fi
119
mkdir ${w}
120
cmd1="python ${SOFT}/select_samples_by_feature.py --work-dir ${featDir} --feature ${featName} --res-dir ${w} "
121
if [[ $relab ]]; then
122
- cmd+="--board ${relab}"
+ cmd1+="--board ${relab}"
123
fi
124
125
echo "$cmd1"
126
$cmd1
127
if [[ $? -eq 0 ]]; then
128
- echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt` samples were selected"
+ echo "Total `wc -l ${w}/samples_list_feature_${featName}.txt | cut -d" " -f1` samples were selected"
129
echo "List of samples containing feature '${featName}' saved to ${w}/samples_list_feature_${featName}.txt"
130
echo "Nucleotide sequence for feature '${featName}' saved to ${w}/seq_feature_${featName}.fasta"
131
comment "Step 1 finished successfully!"
img/examples/bandage_multigraph.png
124 KB
0 commit comments