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overlap. We currently implement a straightforward version: a candidate path is queried along its entire length. There exists a more sophisticated version, where we query a particular portion of a path (referenced via a BED file). See slow-odgi: points of divergence and confusion #32 (comment)
This is a parking lot for slow-odgi things that have gotten some triage but are not going to get done in this current push.
groom
. It's quite a beast! See here and 6c361b2.flip
. Basic functionality, plus document points of divergence.slow-odgi flip
disagrees withodgi flip
on graphnote5.gfa
. See Fixes inslow-odgi flip
#52 (comment)slow-odgi
: investigate why we disagree oninject
#73overlap
. We currently implement a straightforward version: a candidate path is queried along its entire length. There exists a more sophisticated version, where we query a particular portion of a path (referenced via a BED file). See slow-odgi: points of divergence and confusion #32 (comment)depth.uniq
and other such variants that requiresubset_paths
#23slow-odgi
: better benchmarking #72slow-odgi
: CIGAR string overlaps #71slow-odgi
:extract
#100The text was updated successfully, but these errors were encountered: