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Makefile
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Makefile
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.DEFAULT_GOAL := help
BROWSER := python -c "$$BROWSER_PYSCRIPT"
# TODO make more general to use the local matlab version
MATLAB = /usr/local/MATLAB/R2017a/bin/matlab
MATLAB_ARG = -nodisplay -nosplash -nodesktop
define BROWSER_PYSCRIPT
import os, webbrowser, sys
from urllib.request import pathname2url
webbrowser.open("file://" + pathname2url(os.path.abspath(sys.argv[1])))
endef
export BROWSER_PYSCRIPT
# determines what "make help" will show
define PRINT_HELP_PYSCRIPT
import re, sys
for line in sys.stdin:
match = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line)
if match:
target, help = match.groups()
print("%-20s %s" % (target, help))
endef
export PRINT_HELP_PYSCRIPT
################################################################################
# GENERIC
.PHONY: help clean clean-test lint install_dev
help:
@python -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST)
clean: clean-build clean-pyc clean-test ## remove all build, test, coverage artifacts
clean-test: ## remove test and coverage artifacts
rm -rf .tox/
rm -rf .coverage
rm -rf htmlcov/
rm -rf .pytest_cache
rm -rf tests/data
rm -rf test/outputs
install_dev: ## install for both matlab and python developpers
pip install -e .
pip install -r requirements_dev.txt
lint: lint/black lint/flake8 lint/miss_hit ## check style
test: test-matlab test-python
tests/data/nsdcoreexampledataset.mat:
mkdir tests/data
curl -fsSL --retry 5 -o "tests/data/nsdcoreexampledataset.mat" https://osf.io/k89b2/download
################################################################################
################################################################################
# MATLAB
.PHONY: lint/miss_hit
lint/miss_hit: ## lint and checks matlab code
mh_style --fix tests && mh_metric --ci tests && mh_lint tests
test-matlab: tests/data/nsdcoreexampledataset.mat
$(MATLAB) $(MATLAB_ARG) -r "run_tests; exit()"
coverage-matlab: test-matlab
$(BROWSER) coverage_html/index.html
################################################################################
################################################################################
# PYTHON
.PHONY: clean-build clean-pyc coverage-python install lint/flake8 lint/black
clean-build: ## remove build artifacts
rm -fr build/
rm -fr dist/
rm -fr .eggs/
find . -name '*.egg-info' -exec rm -fr {} +
find . -name '*.egg' -exec rm -f {} +
clean-pyc: ## remove Python file artifacts
find . -name '*.pyc' -exec rm -f {} +
find . -name '*.pyo' -exec rm -f {} +
find . -name '*~' -exec rm -f {} +
find . -name '__pycache__' -exec rm -fr {} +
lint/flake8: ## check style with flake8
flake8 tests
lint/black: ## check style with black
black tests
test-python: tests/data/nsdcoreexampledataset.mat ## run tests quickly with the default Python
pytest
test-notebooks:
pytest --nbmake --nbmake-timeout=3000 "./examples"
test-all: ## run tests on every Python version with tox
tox
coverage-python: ## check code coverage quickly with the default Python
coverage run --source glmsingle -m pytest
coverage report -m
coverage html
$(BROWSER) htmlcov/index.html
install: clean ## install the package to the active Python's site-packages
python setup.py install
################################################################################