Releases: d-j-e/SNPPar
v1.2
This includes a fix contributed by Anna Green & Roger Vargas (many thanks!), which changes the default behaviour to skip analysis of sites with missing calls as this can slow things down and cause crashes if there is a lot of missing data.
If needed, you can switch back to the old behaviour or analysing and reporting these sites, using the --include_missing flag.
Version 1.1
This release fixes a major bug that arose due to differences in how SNPPar labelled tree nodes internally vs how treetime labels tree nodes. This resulted in some SNPs being reported on the wrong node/branch numbers, relative to how the nodes were labelled in the output tree.
This problem is now fixed and the issue should no longer arise.
Please do post issues if you continue to encounter problems.
Release version
Merge pull request #16 from d-j-e/v1.0 V1.0
copy recursion fix
Merge pull request #15 from d-j-e/v0.4.2dev V0.4.2dev
fastml fix
Merge pull request #12 from d-j-e/v0.4.1dev V0.4.1dev