Skip to content

Issues: dahak-metagenomics/dahak

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 40 Closed
33 Open 40 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Read filtering Workflow: Not producing a MultiQC report
#124 opened Jul 27, 2018 by nalbright
1
singularity bind point error in workflow
#123 opened Jul 25, 2018 by cgrahlm
Running non-shakya datasets through read filtering: Workflow Error
#122 opened Jul 25, 2018 by nalbright
1
Taxonomic Classification with Sourmash (Really Quick Start): Documentation Error?
#121 opened Jul 24, 2018 by nalbright
2
MultiQC not in Read Filtering, but in Assembly workflows
#120 opened Jul 24, 2018 by nalbright
Assembly workflow outputs questions: what to interpret and pipe into comparison workflow?
#116 opened Jul 23, 2018 by nalbright
Error running assembly workflow on Ubuntu: Error in rule assembly_megahit:
#113 opened Jul 18, 2018 by nalbright
6
UBUNTU read filtering: Error: trimmomatic: command not found
#111 opened Jul 16, 2018 by nalbright
1
Anvi’o enhancement
#109 opened Jul 14, 2018 by kternus
CoMeta for Metagenome Comparisons enhancement
#108 opened Jul 14, 2018 by kternus
Trouble getting started with Quickstart
#104 opened Jul 12, 2018 by nalbright
4
running quickstart tutorial fails: squashfs-tools not available
#102 opened Jul 11, 2018 by stephenturner
16
installation with conda
#99 opened Jul 11, 2018 by stephenturner
3
How can specific sequences from metagenomes be extracted for further analysis? enhancement
#86 opened Jun 9, 2018 by kternus
1
Could an optional workflow/script be provided to downsample datasets to 1%? enhancement
#85 opened Jun 9, 2018 by kternus
2
Strategy for testing Strategy/Planning
#73 opened Apr 16, 2018 by charlesreid1
1
What do we need for a 1.0 release help wanted Strategy/Planning
#64 opened Mar 17, 2018 by brooksph
7
Discussion of Documentation Content & Workflows
#61 opened Mar 12, 2018 by charlesreid1
11
Storing big files (issue-collecting issue) Strategy/Planning
#53 opened Feb 14, 2018 by charlesreid1
Does the Snakemake archive feature support singularity?
#52 opened Feb 14, 2018 by brooksph
@charlesreid1
2
Create spike-in dataset with Eukaryotic and viral DNA
#48 opened Feb 8, 2018 by brooksph
3
Create read mapping and variant calling snakefile
#46 opened Feb 8, 2018 by brooksph
@brooksph
1
Feature request - Quast visualization with multiqc
#42 opened Jan 22, 2018 by brooksph
FDA argos database - reference genome assemblies and illumina and pacbio reads
#39 opened Oct 27, 2017 by brooksph
Gene-level summaries of metagenomes – appropriate for dahak?
#38 opened Sep 22, 2017 by sminot
11
ProTip! Find all open issues with in progress development work with linked:pr.