Taxonomic Classification with Sourmash (Really Quick Start): Documentation Error?

[nalbright]

Following the Really Quick Copy-And-Paste Quick Start: I created "custom_taxclass_signatures_workflow.json" for the signatures workflow. Immediately following these instructions to copy and past, I see the "create JSON for the taxonomic classification gather workflow" has an odd format that might be cutting off some instructions at the end. It include things that I don't think are meant to be in the JSON and is missing some instructions that all the other workflows include (i.e. what to name).

Could you please clarify the following:

1. should I be executing anything at the end of the signatures workflow (before comparison workflow)
2. what should all be included in the two JSONs for the taxonomic classification gather workflow?

Thanks!
Nicolette

[nalbright]

Update: Error: When trying to run the workflow as is with command $snakemake -p -n --use-singularity --local-cores 4 --configfile=config/custom_comparison_work.json comparison_workflow_reads_assembly
Output:
Building DAG of jobs..
Nothing to be done.

[charlesreid1]

This portion of the instructions was not tested. The workflow works but the instructions were incomplete and that's why the formatting was awry.