detectTranscripts: Error in Fp[[i]] + 1 : non-numeric argument to binary operator

[millerh1]

Hello -- running your tutorial with my own bam files I got this error at detectTranscripts:

Error in Fp[[i]] + 1 : non-numeric argument to binary operator

The fix was to run keepStandardChromosomes to remove any unusual seq levels from the granges object. This could also be achieved with just dropping empty seq levels probably.

Also detectTranscripts caused a segfault in Rstudio -- I think it was just too much text printing to the console.