docker_cron.yaml

# Run the cron job in docker container
name: docker_cron

on:
  pull_request:
    branches:
      - main
  schedule:
    - cron: '0 0 * * *' # daily



jobs:
  salvage_pipeline:
    name: salvage pipeline
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: install containers
        run: |
          docker pull dapperstats/accessor
          docker pull dapperstats/salvage
      - name: start up and name containers
        run: |
          docker run --name acc --restart=always -i dapperstats/accessor
          docker run --name salv --restart=always -id dapperstats/salvage
      - name: copy data files and scripts
        run: |
          docker cp acc:/data .
          docker cp data salv:/
          docker cp acc:/scripts .
          docker cp scripts salv:/
          docker cp site salv:/
      - name: run R salvage script in the container
        run: |
          docker exec -i salv R -e "source('scripts/salvage_script.R')"
      - name: copy out the site and list contents
        run: |
          docker cp salv:/site .
          ls site
      - name: update the github repo with the built site for cron
        if: ${{ github.event_name == 'schedule'}}
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        run: |
          bash scripts/update_github.bash 
      - name: don't update the github repo with the built site for pr
        if: ${{ github.event_name == 'pull_request'}}
        run: |
          echo "Repo not updated for PR only"