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richgenes.as
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table richGenes
"Rich gene models"
(
string chrom; "Reference sequence chromosome or scaffold"
uint chromStart; "Start position in chromosome"
uint chromEnd; "End position in chromosome"
string name; "Name of item."
uint score; "Score (0-1000)"
char[1] strand; "+ or - for strand"
uint thickStart; "Start of where display should be thick (start codon)"
uint thickEnd; "End of where display should be thick (stop codon)"
uint reserved; "Used as itemRgb as of 2004-11-22"
int blockCount; "Number of blocks"
int[blockCount] blockSizes; "Comma separated list of block sizes"
int[blockCount] chromStarts; "Start positions relative to chromStart"
string name2; "Alternative/human readable name"
string cdsStartStat; "enum('none','unk','incmpl','cmpl')"
string cdsEndStat; "enum('none','unk','incmpl','cmpl')"
int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon"
string method; "Transcript type"
string geneName; "Primary identifier for gene"
string geneName2; "Alternative/human readable gene name"
string geneType; "Gene type"
)