Information about the data used in the genomics lessons.
An example FASTQ file was generated by taking the first 100 records (head -n 400) of the FASTQ file from sample Col0_C1 of this experiment. This is a dataset of the Arabidopsis thaliana accession Columbia 0 (the reference). The original dataset can be downloaded through the ftp of SRA (1.6 GB).
A subset of the reads aligning to the first 100kb of the chromosome 1 of from sample Col0_C1 of experiment MTAB-3279 has been uploaded to figshare: SAM, BAM, BAI.
Full data can be found here.