From 8196ee101fbec9da8bb0fe638871f72cf5dda801 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 19 Nov 2024 00:27:18 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : 2fea52463b280fbf999ab433952e1e922677292b
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-06-07 13:42:11 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 564ffcd7aa54ea908ecc35bdfced36cbb067f464
Branch  : main
Author  : JCSzamosi <4465403+JCSzamosi@users.noreply.github.com>
Time    : 2024-06-07 13:41:27 +0000
Message : Merge pull request #164 from asntech/patch-1

Link to setup.html throws 404: fixes link to setup instructions.
---
 01-tidiness.html                    |  6 +++---
 02-project-planning.html            |  6 +++---
 03-ncbi-sra.html                    |  4 ++--
 404.html                            |  4 ++--
 CODE_OF_CONDUCT.html                |  2 +-
 LICENSE.html                        |  2 +-
 aio.html                            | 14 +++++++-------
 data.html                           |  2 +-
 discuss.html                        |  2 +-
 images.html                         |  4 ++--
 index.html                          |  4 ++--
 instructor-notes.html               |  4 ++--
 instructor/01-tidiness.html         |  6 +++---
 instructor/02-project-planning.html |  6 +++---
 instructor/03-ncbi-sra.html         |  4 ++--
 instructor/404.html                 |  4 ++--
 instructor/CODE_OF_CONDUCT.html     |  2 +-
 instructor/LICENSE.html             |  2 +-
 instructor/aio.html                 | 14 +++++++-------
 instructor/data.html                |  2 +-
 instructor/discuss.html             |  2 +-
 instructor/images.html              |  4 ++--
 instructor/index.html               |  4 ++--
 instructor/instructor-notes.html    |  4 ++--
 instructor/key-points.html          |  4 ++--
 instructor/old-ncbi.html            |  2 +-
 instructor/profiles.html            |  4 ++--
 instructor/reference.html           |  2 +-
 key-points.html                     |  4 ++--
 old-ncbi.html                       |  2 +-
 pkgdown.yml                         |  2 +-
 profiles.html                       |  4 ++--
 reference.html                      |  2 +-
 33 files changed, 67 insertions(+), 67 deletions(-)

diff --git a/01-tidiness.html b/01-tidiness.html
index 77f27c3..f27c9e6 100644
--- a/01-tidiness.html
+++ b/01-tidiness.html
@@ -356,7 +356,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Types of files and information you have generated:</p>
 <ul><li>Spreadsheet or tabular data with the data from your experiment and
@@ -479,7 +479,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -585,7 +585,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/02-project-planning.html b/02-project-planning.html
index a631ea4..7f1127a 100644
--- a/02-project-planning.html
+++ b/02-project-planning.html
@@ -385,7 +385,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -445,7 +445,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
@@ -599,7 +599,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-04",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/03-ncbi-sra.html b/03-ncbi-sra.html
index 020d879..475b41a 100644
--- a/03-ncbi-sra.html
+++ b/03-ncbi-sra.html
@@ -468,7 +468,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 4acec96..eef8afb 100644
--- a/404.html
+++ b/404.html
@@ -331,8 +331,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 9db0497..39bc2a1 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -358,7 +358,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 7c68f61..170101e 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -406,7 +406,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index d6243cd..204c2c7 100644
--- a/aio.html
+++ b/aio.html
@@ -389,7 +389,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Types of files and information you have generated:</p>
 <ul>
@@ -522,7 +522,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -669,7 +669,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -743,7 +743,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1037,7 +1037,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1174,8 +1174,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/data.html b/data.html
index 33586bb..bfdf7b6 100644
--- a/data.html
+++ b/data.html
@@ -438,7 +438,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 9e11bae..fef10f4 100644
--- a/discuss.html
+++ b/discuss.html
@@ -351,7 +351,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 95c0f16..af731b5 100644
--- a/images.html
+++ b/images.html
@@ -405,8 +405,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index d9bd04a..7c65afa 100644
--- a/index.html
+++ b/index.html
@@ -403,8 +403,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index bd08371..be37fa6 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -528,8 +528,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/01-tidiness.html b/instructor/01-tidiness.html
index 8ffa678..7ed4db3 100644
--- a/instructor/01-tidiness.html
+++ b/instructor/01-tidiness.html
@@ -358,7 +358,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Types of files and information you have generated:</p>
 <ul><li>Spreadsheet or tabular data with the data from your experiment and
@@ -481,7 +481,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -587,7 +587,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/02-project-planning.html b/instructor/02-project-planning.html
index 9f04f8f..4b05357 100644
--- a/instructor/02-project-planning.html
+++ b/instructor/02-project-planning.html
@@ -387,7 +387,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -447,7 +447,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-04",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/03-ncbi-sra.html b/instructor/03-ncbi-sra.html
index 8e43635..101be73 100644
--- a/instructor/03-ncbi-sra.html
+++ b/instructor/03-ncbi-sra.html
@@ -470,7 +470,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
@@ -603,7 +603,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index cef2055..5367edb 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -331,8 +331,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 51c9619..bfad633 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -360,7 +360,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 920ec34..c5ebea1 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -408,7 +408,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 7d8be13..18f1e7c 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -396,7 +396,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Types of files and information you have generated:</p>
 <ul>
@@ -529,7 +529,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>A full set of types of issues with spreadsheet data is at the <a href="https://www.datacarpentry.org/spreadsheet-ecology-lesson/02-common-mistakes/" class="external-link">Data
 Carpentry Ecology spreadsheet lesson</a>. Not all are present in this
@@ -677,7 +677,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -751,7 +751,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1046,7 +1046,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1183,8 +1183,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/data.html b/instructor/data.html
index 175e3ef..a54701c 100644
--- a/instructor/data.html
+++ b/instructor/data.html
@@ -440,7 +440,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 1f668b4..6bec630 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -353,7 +353,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 8be4dc6..fce0af1 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -411,8 +411,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 14ca374..f8a6d0b 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -446,8 +446,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 1047a92..677ce91 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -537,8 +537,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index 2b5af97..e84b11d 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -396,8 +396,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/old-ncbi.html b/instructor/old-ncbi.html
index 8cb2009..ad2e94b 100644
--- a/instructor/old-ncbi.html
+++ b/instructor/old-ncbi.html
@@ -374,7 +374,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 00e2fb2..61d6915 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index c609c61..1bbce22 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -450,7 +450,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index 30866c9..93d3220 100644
--- a/key-points.html
+++ b/key-points.html
@@ -390,8 +390,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/old-ncbi.html b/old-ncbi.html
index 8c7635a..6ca8ff8 100644
--- a/old-ncbi.html
+++ b/old-ncbi.html
@@ -372,7 +372,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 93817ca..009c987 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-11-12T00:24Z
+last_built: 2024-11-19T00:27Z
diff --git a/profiles.html b/profiles.html
index 78ce8e6..0026de3 100644
--- a/profiles.html
+++ b/profiles.html
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-11-12",
-  "datePublished": "2024-11-12"
+  "dateModified": "2024-11-19",
+  "datePublished": "2024-11-19"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index b08ae88..a315593 100644
--- a/reference.html
+++ b/reference.html
@@ -448,7 +448,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-11-12"
+  "datePublished": "2024-11-19"
 }
 
   </script><script>