diff --git a/03-ncbi-sra.md b/03-ncbi-sra.md index 2ee832b2..de903426 100644 --- a/03-ncbi-sra.md +++ b/03-ncbi-sra.md @@ -25,7 +25,7 @@ There are many repositories for public data. Some model organisms or fields have ## Accessing the original archived data -The [sequencing dataset (from Tenaillon, *et al.* 2016) adapted for this lesson](https://www.datacarpentry.org/organization-genomics/data/) was obtained from the [NCBI Sequence Read Archive](https://www.ncbi.nlm.nih.gov/sra), which is a large (~27 petabasepairs/2.7 x 10^16 basepairs as of April 2019) repository for next-generation sequence data. Like many NCBI databases, it is complex and mastering its use is greater than the scope of this lesson. Very often there will be a direct link (perhaps in the supplemental information) to where the SRA dataset can be found. We are only using a small part of these data, so a direct link cannot be found. If you have time, go through the following detailed description of finding the data we are using today (otherwise skip to the next section). +The [sequencing dataset (from Tenaillon, *et al.* 2016) adapted for this lesson](https://www.datacarpentry.org/organization-genomics/data) was obtained from the [NCBI Sequence Read Archive](https://www.ncbi.nlm.nih.gov/sra), which is a large (~27 petabasepairs/2.7 x 10^16 basepairs as of April 2019) repository for next-generation sequence data. Like many NCBI databases, it is complex and mastering its use is greater than the scope of this lesson. Very often there will be a direct link (perhaps in the supplemental information) to where the SRA dataset can be found. We are only using a small part of these data, so a direct link cannot be found. If you have time, go through the following detailed description of finding the data we are using today (otherwise skip to the next section). ### Locate the Run Selector Table for the Lenski Dataset on the SRA diff --git a/md5sum.txt b/md5sum.txt index 6599795a..659d4eb4 100644 --- a/md5sum.txt +++ b/md5sum.txt @@ -5,7 +5,7 @@ "index.md" "952189b1c796fb503a81927376cc70fc" "site/built/index.md" "2023-06-13" "episodes/01-tidiness.md" "4df50eab6edeb9e266d3f427fc409c8b" "site/built/01-tidiness.md" "2023-06-14" "episodes/02-project-planning.md" "b7cba76b7735072570d4f4f4754f3e92" "site/built/02-project-planning.md" "2023-05-02" -"episodes/03-ncbi-sra.md" "a2c249e489ee4e24ecffffcdda881fc6" "site/built/03-ncbi-sra.md" "2023-06-12" +"episodes/03-ncbi-sra.md" "a783ea2b9a22fe92c996dce6f66583b0" "site/built/03-ncbi-sra.md" "2023-06-23" "instructors/data.md" "3bb097fa45131e73e0860e8d4012d509" "site/built/data.md" "2023-05-02" "instructors/instructor-notes.md" "f3f7514a8b65d990adba4a5f874c1997" "site/built/instructor-notes.md" "2023-05-02" "instructors/old-ncbi.md" "832bcf8a0876a6e571b1e79bfa84437e" "site/built/old-ncbi.md" "2023-05-02"