docker-compose-test.yaml

# PY_VER=3.9 IMAGE=djtest DISTRO=alpine AS_SCRIPT=FALSE PHARUS_VERSION=$(cat pharus/version.py | grep -oP '\d+\.\d+\.\d+') HOST_UID=$(id -u) docker compose -f docker-compose-test.yaml up --exit-code-from pharus
#
# Intended for running test suite locally.
# Note: If requirements or Dockerfile change, will need to add --build flag.
version: "2.4"
x-net:
  &net
  networks:
    - main
services:
  db:
    <<: *net
    image: datajoint/mysql:5.7
    environment:
      - MYSQL_ROOT_PASSWORD=simple
  pharus:
    <<: *net
    stdin_open: true # docker run -i
    tty: true        # docker run -t
    extends:
      file: ./docker-compose-build.yaml
      service: pharus
    environment:
      - FLASK_ENV=development # enables logging to console from Flask
      - TEST_DB_SERVER=${TEST_DB_SERVER:-db}
      - TEST_DB_USER=${TEST_DB_USER:-root}
      - TEST_DB_PASS=${TEST_DB_PASS:-simple}
      - AS_SCRIPT
      - PHARUS_SPEC_PATH=tests/init/test_dynamic_api_spec.yaml
    volumes:
      - ./requirements_test.txt:/tmp/pip_requirements.txt
      - ./pharus:/opt/conda/lib/python${PY_VER}/site-packages/pharus
    command:
      - sh
      - -c
      - |
        set -e
        if echo "${AS_SCRIPT}" | grep -i true &>/dev/null; then
          echo "------ SYNTAX TESTS ------"
          PKG_DIR=/main/pharus
          flake8 $${PKG_DIR} --count --select=E9,F63,F7,F82 --show-source --statistics
          flake8 /main/tests --count --select=E9,F63,F7,F82 --show-source --statistics
          echo "------ UNIT TESTS ------"
          pytest -sv --cov-report term-missing --cov=pharus /main/tests/
          echo "------ STYLE TESTS ------"
          black $${PKG_DIR} --required-version '24.8.0' --check -v --extend-exclude "^.*dynamic_api.py$$"
          flake8 $${PKG_DIR} --count --max-complexity=20 --max-line-length=94 --statistics --exclude=*dynamic_api.py --ignore=W503,W605
          black /main/tests --required-version '24.8.0' --check -v
          flake8 /main/tests --count --max-complexity=20 --max-line-length=94 --statistics --ignore=F401,F811,W503,F403
        else
          echo "=== Running ==="
          echo "Please see 'docker-compose-test.yaml' for detail on running tests."
          tail -f /dev/null
        fi
    depends_on:
      db:
        condition: service_healthy
networks:
  main: