-
Notifications
You must be signed in to change notification settings - Fork 6
/
Copy pathsample_DNAs.fasta
266 lines (266 loc) · 15 KB
/
sample_DNAs.fasta
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
>test_DNA_regular
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
>test_DNA_small
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
>test_DNA_N_noambiguous
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTCNNN
>test_DNA_ambiguous_noN
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTCMRWSYKVHDB
>test_DNA_N_ambiguous
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTCMRWSYKVHDBN
>test_DNA_gaps
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCT-CGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACT-AATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCA-AAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
>test_DNA_spaces
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAGTCCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCT CGGCCGTCCCCTGACGGTGCATAATCATACCTTTTGGACGTCGA
ATTCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACT AATATCTAAAATATTGCGACCAGGTGG
TGACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCA AAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCTTAAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
>test_DNA_symbols
CATCTCTACGCGATACTGGTCTCGTAACTTCTAGAACGTTGGTGCGCTACACTGATTTTT
TGTTGGTCTACGTGAGGTGTTGTCACAG#CCAGTTGCGATGTCGCACATTAGATAGTAAG
CTCTAGCCACGATATACGCTGAGATGAACACACGGGCACCAAATACCTGACAAAACTATC
TTCTAGGGTGCGCTCTCCTTGTGCCCACAGGGGGACCCATCACGGTTAGATCCCGAAGTG
CGTGTCACCACTCCCTCTTCTCACTTGTGGTAAGGTGGTGCGACATCCTCCCGCCAGTCT
ATTTGGCAAGGCCACCGATATGGGATCCCGAGATCTGCTGCATTCATTCGTCACCTCACA
ACCGGTGCCTAGCCTGCGGCCGTCCCCTGACGGTGCATAATCATACC/TTTGGACGTCGA
A$TCAGAATCCTCTCGGTTCGATCCCCGCTTGTGGAGTATGTGTTCCACACCTAGATATT
GTCTTTTGAAGAGCCAGCACGGAAGCATCTCTGCAACGCATCGGCAATATGGGCGACGAG
AAGACAAGGCGGTGAGTTTGGTGTCTCAGACTAAATATCTAAAATATTGCGACCAGGTGG
T'ACCTTTCTGGTCCCACTATCTCCTTTTGCCAACTTCGCTGGAAAGAGATTAATGACCC
CTCATGTGTCCGGGAGTGATTCCCACCGGTACAGTTTCTGTCCGCGGGTGTGCAGGCCTA
GATGTCGTCCGCACAAGTTGCCACAGCATAGATGCTAAATCTGCGGCGACCCAACACTAC
GCAGGCCT?AAATACTTTAGATAGCGCGGCCACGCGAGACTAACTCAGACCCTCTAGGCA
GTCTTTGGAAGCTTATCTGCCTCCTCTCATGACACCTCCCTGCAGCGTCCATTAATCGCA
CGCACTAGAAATGTCGAGCACTATATATAGCGTGCCGAATTTGCGCCAGTCTTTACATTG
AGTCCCGCCCACCCAGGAGGTGCAGTGTGGAGACAGATTC
>test_DNA_regular_lowcase
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcctgcggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagactaaatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgcacaagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattc
>test_DNA_lowcase_small
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattc
>test_DNA_lowcase_N_noambiguous
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcctgcggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagactaaatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgcacaagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattcmrwsykvhdb
>test_DNA_lowcase_ambiguous_noN
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcctgcggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagactaaatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgcacaagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattcmrwsykvhdb
>test_DNA_lowcase_N_ambiguous
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcctgcggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagactaaatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgcacaagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattcmrwsykvhdbn
>test_DNA_gaps
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcct-cggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagact-aatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgca-aagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattc
>test_DNA_spaces
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacagtccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcct cggccgtcccctgacggtgcataatcataccttttggacgtcga
attcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagact aatatctaaaatattgcgaccaggtgg
tgacctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgca aagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggccttaaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattc
>test_DNA_symbols
catctctacgcgatactggtctcgtaacttctagaacgttggtgcgctacactgattttt
tgttggtctacgtgaggtgttgtcacag#ccagttgcgatgtcgcacattagatagtaag
ctctagccacgatatacgctgagatgaacacacgggcaccaaatacctgacaaaactatc
ttctagggtgcgctctccttgtgcccacagggggacccatcacggttagatcccgaagtg
cgtgtcaccactccctcttctcacttgtggtaaggtggtgcgacatcctcccgccagtct
atttggcaaggccaccgatatgggatcccgagatctgctgcattcattcgtcacctcaca
accggtgcctagcctgcggccgtcccctgacggtgcataatcatacc/tttggacgtcga
a$tcagaatcctctcggttcgatccccgcttgtggagtatgtgttccacacctagatatt
gtcttttgaagagccagcacggaagcatctctgcaacgcatcggcaatatgggcgacgag
aagacaaggcggtgagtttggtgtctcagactaaatatctaaaatattgcgaccaggtgg
t'acctttctggtcccactatctccttttgccaacttcgctggaaagagattaatgaccc
ctcatgtgtccgggagtgattcccaccggtacagtttctgtccgcgggtgtgcaggccta
gatgtcgtccgcacaagttgccacagcatagatgctaaatctgcggcgacccaacactac
gcaggcct?aaatactttagatagcgcggccacgcgagactaactcagaccctctaggca
gtctttggaagcttatctgcctcctctcatgacacctccctgcagcgtccattaatcgca
cgcactagaaatgtcgagcactatatatagcgtgccgaatttgcgccagtctttacattg
agtcccgcccacccaggaggtgcagtgtggagacagattc