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sample_RNAs.fasta
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sample_RNAs.fasta
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>test_RNA_regular
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCUGCGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACUAAAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCACAAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUC
>test_RNA_N_noambiguous
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCUGCGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACUAAAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCACAAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUCNNN
>test_RNA_ambiguous_noN
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCUGCGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACUAAAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCACAAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUCMRWSYKVHDB
>test_RNA_N_ambiguous
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCUGCGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACUAAAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCACAAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUCMRWSYKVHDBN
>test_RNA_small
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUC
>test_RNA_gaps
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCU-CGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACU-AAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCA-AAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUC
>test_RNA_spaces
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAGUCCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCU CGGCCGUCCCCUGACGGUGCAUAAUCAUACCUUUUGGACGUCGA
AUUCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACU AAUAUCUAAAAUAUUGCGACCAGGUGG
UGACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCA AAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCUUAAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUC
>test_RNA_symbols
CAUCUCUACGCGAUACUGGUCUCGUAACUUCUAGAACGUUGGUGCGCUACACUGAUUUUU
UGUUGGUCUACGUGAGGUGUUGUCACAG#CCAGUUGCGAUGUCGCACAUUAGAUAGUAAG
CUCUAGCCACGAUAUACGCUGAGAUGAACACACGGGCACCAAAUACCUGACAAAACUAUC
UUCUAGGGUGCGCUCUCCUUGUGCCCACAGGGGGACCCAUCACGGUUAGAUCCCGAAGUG
CGUGUCACCACUCCCUCUUCUCACUUGUGGUAAGGUGGUGCGACAUCCUCCCGCCAGUCU
AUUUGGCAAGGCCACCGAUAUGGGAUCCCGAGAUCUGCUGCAUUCAUUCGUCACCUCACA
ACCGGUGCCUAGCCUGCGGCCGUCCCCUGACGGUGCAUAAUCAUACC/UUUGGACGUCGA
A$UCAGAAUCCUCUCGGUUCGAUCCCCGCUUGUGGAGUAUGUGUUCCACACCUAGAUAUU
GUCUUUUGAAGAGCCAGCACGGAAGCAUCUCUGCAACGCAUCGGCAAUAUGGGCGACGAG
AAGACAAGGCGGUGAGUUUGGUGUCUCAGACUAAAUAUCUAAAAUAUUGCGACCAGGUGG
U'ACCUUUCUGGUCCCACUAUCUCCUUUUGCCAACUUCGCUGGAAAGAGAUUAAUGACCC
CUCAUGUGUCCGGGAGUGAUUCCCACCGGUACAGUUUCUGUCCGCGGGUGUGCAGGCCUA
GAUGUCGUCCGCACAAGUUGCCACAGCAUAGAUGCUAAAUCUGCGGCGACCCAACACUAC
GCAGGCCU?AAAUACUUUAGAUAGCGCGGCCACGCGAGACUAACUCAGACCCUCUAGGCA
GUCUUUGGAAGCUUAUCUGCCUCCUCUCAUGACACCUCCCUGCAGCGUCCAUUAAUCGCA
CGCACUAGAAAUGUCGAGCACUAUAUAUAGCGUGCCGAAUUUGCGCCAGUCUUUACAUUG
AGUCCCGCCCACCCAGGAGGUGCAGUGUGGAGACAGAUUC
>test_RNA_regular_lowcase
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccugcggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacuaaauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgcacaaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauuc
>test_RNA_lowcase_small
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauuc
>test_RNA_lowcase_N_noambiguous
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccugcggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacuaaauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgcacaaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauucnnn
>test_RNA_lowcase_ambiguous_noN
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccugcggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacuaaauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgcacaaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauucmrwsykvhdb
>test_RNA_lowcase_N_ambiguous
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccugcggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacuaaauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgcacaaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauucmrwsykvhdbn
>test_RNA_gaps
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccu-cggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacu-aauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgca-aaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauuc
>test_RNA_spaces
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacaguccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccu cggccguccccugacggugcauaaucauaccuuuuggacgucga
auucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacu aauaucuaaaauauugcgaccaggugg
ugaccuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgca aaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccuuaaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauuc
>test_RNA_symbols
caucucuacgcgauacuggucucguaacuucuagaacguuggugcgcuacacugauuuuu
uguuggucuacgugagguguugucacag#ccaguugcgaugucgcacauuagauaguaag
cucuagccacgauauacgcugagaugaacacacgggcaccaaauaccugacaaaacuauc
uucuagggugcgcucuccuugugcccacagggggacccaucacgguuagaucccgaagug
cgugucaccacucccucuucucacuugugguaagguggugcgacauccucccgccagucu
auuuggcaaggccaccgauaugggaucccgagaucugcugcauucauucgucaccucaca
accggugccuagccugcggccguccccugacggugcauaaucauacc/uuuggacgucga
a$ucagaauccucucgguucgauccccgcuuguggaguauguguuccacaccuagauauu
gucuuuugaagagccagcacggaagcaucucugcaacgcaucggcaauaugggcgacgag
aagacaaggcggugaguuuggugucucagacuaaauaucuaaaauauugcgaccaggugg
u'accuuucuggucccacuaucuccuuuugccaacuucgcuggaaagagauuaaugaccc
cucauguguccgggagugauucccaccgguacaguuucuguccgcgggugugcaggccua
gaugucguccgcacaaguugccacagcauagaugcuaaaucugcggcgacccaacacuac
gcaggccu?aaauacuuuagauagcgcggccacgcgagacuaacucagacccucuaggca
gucuuuggaagcuuaucugccuccucucaugacaccucccugcagcguccauuaaucgca
cgcacuagaaaugucgagcacuauauauagcgugccgaauuugcgccagucuuuacauug
agucccgcccacccaggaggugcaguguggagacagauuc