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notebook.tex
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% Default to the notebook output style
% Inherit from the specified cell style.
\documentclass[11pt]{article}
\usepackage[T1]{fontenc}
% Nicer default font (+ math font) than Computer Modern for most use cases
\usepackage{mathpazo}
% Basic figure setup, for now with no caption control since it's done
% automatically by Pandoc (which extracts  syntax from Markdown).
\usepackage{graphicx}
% We will generate all images so they have a width \maxwidth. This means
% that they will get their normal width if they fit onto the page, but
% are scaled down if they would overflow the margins.
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth
\else\Gin@nat@width\fi}
\makeatother
\let\Oldincludegraphics\includegraphics
% Set max figure width to be 80% of text width, for now hardcoded.
\renewcommand{\includegraphics}[1]{\Oldincludegraphics[width=.8\maxwidth]{#1}}
% Ensure that by default, figures have no caption (until we provide a
% proper Figure object with a Caption API and a way to capture that
% in the conversion process - todo).
\usepackage{caption}
\DeclareCaptionLabelFormat{nolabel}{}
\captionsetup{labelformat=nolabel}
\usepackage{adjustbox} % Used to constrain images to a maximum size
\usepackage{xcolor} % Allow colors to be defined
\usepackage{enumerate} % Needed for markdown enumerations to work
\usepackage{geometry} % Used to adjust the document margins
\usepackage{amsmath} % Equations
\usepackage{amssymb} % Equations
\usepackage{textcomp} % defines textquotesingle
% Hack from http://tex.stackexchange.com/a/47451/13684:
\AtBeginDocument{%
\def\PYZsq{\textquotesingle}% Upright quotes in Pygmentized code
}
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% to support a larger range
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% internal cross-reference links, web links for URLs, etc.)
\usepackage{hyperref}
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\usepackage{booktabs} % table support for pandoc > 1.12.2
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\begin{document}
\maketitle
\hypertarget{modeling-and-simulation-in-python}{%
\section{Modeling and Simulation in
Python}\label{modeling-and-simulation-in-python}}
Project 1
Leatherback Sea Turtles Nesting Mother Population
Kyle McCracken and David Tarazi
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor} }]:} \PY{n}{Question} \PY{n}{to} \PY{n}{answer}\PY{p}{:} \PY{n}{What} \PY{o+ow}{is} \PY{o+ow}{and} \PY{n}{what} \PY{n}{will} \PY{n}{be} \PY{n}{the} \PY{n}{leatherback} \PY{n}{sea} \PY{n}{turtle} \PY{n}{population} \PY{n}{of} \PY{n}{nesting} \PY{n}{females} \PY{o+ow}{in} \PY{n}{the} \PY{n}{US} \PY{n}{virgin} islands\PY{o}{?}
\end{Verbatim}
Model: Parameters/Data US Virgin Island Data: Nesting numbers, females
recorded on the beach Data we need to test for: population proxy,
birth/survival rate for females, natural death rate Functions Needed
with parameters needed from system/state births(nestpop, pop proxy)
step/newnestpop(last years prediction/pop proxy, births-deaths) trying
to align this prediciton with the females recorded to predict nesting
female population also uses data to decypher returning females rate
after 1yr, 2yrs, 3yrs\ldots{} until stop final plot of number of nesting
females
\begin{Verbatim}[commandchars=\\\{\}]
{\color{incolor}In [{\color{incolor}1}]:} \PY{c+c1}{\PYZsh{} Configure Jupyter so figures appear in the notebook}
\PY{o}{\PYZpc{}}\PY{k}{matplotlib} inline
\PY{c+c1}{\PYZsh{} Configure Jupyter to display the assigned value after an assignment}
\PY{o}{\PYZpc{}}\PY{k}{config} InteractiveShell.ast\PYZus{}node\PYZus{}interactivity=\PYZsq{}last\PYZus{}expr\PYZus{}or\PYZus{}assign\PYZsq{}
\PY{c+c1}{\PYZsh{} import functions from the modsim.py module}
\PY{k+kn}{from} \PY{n+nn}{modsim} \PY{k}{import} \PY{o}{*}
\PY{k+kn}{from} \PY{n+nn}{pandas} \PY{k}{import} \PY{n}{read\PYZus{}html}
\end{Verbatim}
% Add a bibliography block to the postdoc
\end{document}