HomoloGene RDF

Original data

NCBI HomoloGene

• Data provider
  • National Center for Biotechnology Information
• License
  • https://www.ncbi.nlm.nih.gov/home/about/policies/
• Statistics
  • https://www.ncbi.nlm.nih.gov/homologene/statistics/
• Download
  • https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/build68/

Created RDF

2023-05-17

$ curl -OR https://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/build68/homologene.xml.gz
$ gunzip homologene.xml.gz
$ ./bin/homologene.xml2ttl.py homologene.xml > rdf/homologene_2023-05-17.ttl

• Version
  • release_20230517
• Issued
  • 2023-05-17
• Turtle file
  • https://github.com/dbcls/homologene-rdf/blob/main/rdf/homologene_2023-05-17.ttl
• RDF-config
  • https://github.com/dbcls/rdf-config/tree/master/config/homologene
• Schema
  • https://raw.githubusercontent.com/dbcls/rdf-config/master/config/homologene/schema.svg

Previous version

$ ./bin/homologene.data2ttl.py original/homologene.data > rdf/homologene_2023-03-01.ttl

• Creator
  • Hirokazu Chiba
• Version
  • release_20230301
• Issued
  • 2023-03-01
• Turtle file
  • https://github.com/dbcls/homologene-rdf/blob/main/rdf/homologene_2023-03-01.ttl

SPARQL examples

• orthologs.rq
• paralogs.rq