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fix bug: cannot set property default_mesh of DeepmdDataSystem #4360

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merged 2 commits into from
Nov 19, 2024

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ChiahsinChu
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@ChiahsinChu ChiahsinChu commented Nov 15, 2024

Currently, the multi-task cannot work correctly, and an error is thrown. (See #4358 for more details)
To fix this bug, a minor change in DeepmdDataSystem is made to make the property default_mesh editable.

Summary by CodeRabbit

  • New Features

    • Introduced a new attribute for caching default mesh values, improving efficiency.
    • Added functionality to set test size as a percentage of total structures.
    • New method for automated test size calculation based on specified percentages.
  • Deprecations

    • Marked the get_test method as deprecated, shifting to a new approach for accessing test data.

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codecov bot commented Nov 15, 2024

Codecov Report

Attention: Patch coverage is 85.71429% with 1 line in your changes missing coverage. Please review.

Project coverage is 81.51%. Comparing base (caf330f) to head (1e0b4fa).
Report is 1 commits behind head on r2.

Files with missing lines Patch % Lines
deepmd_utils/utils/data_system.py 85.71% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##               r2    #4360   +/-   ##
=======================================
  Coverage   81.51%   81.51%           
=======================================
  Files         342      342           
  Lines       33882    33888    +6     
  Branches     2881     2878    -3     
=======================================
+ Hits        27618    27623    +5     
- Misses       5381     5382    +1     
  Partials      883      883           

☔ View full report in Codecov by Sentry.
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coderabbitai bot commented Nov 15, 2024

📝 Walkthrough
📝 Walkthrough

Walkthrough

The changes involve modifications to the DeepmdDataSystem class within the deepmd_utils/utils/data_system.py file. A new private attribute _default_mesh is introduced to manage the default mesh, along with updates to the default_mesh property for caching. The constructor is revised to initialize _default_mesh, and the handling of test_size is enhanced to support percentage-based settings. A new method _make_auto_ts is added for calculating test sizes, and the get_test method is deprecated, shifting the approach to loading test data.

Changes

File Change Summary
deepmd_utils/utils/data_system.py - Added private attribute _default_mesh to store default mesh.
- Updated default_mesh property with caching and added a setter.
- Modified constructor to initialize _default_mesh.
- Altered test_size handling to allow percentage settings.
- Added method _make_auto_ts for test size calculation.
- Deprecated get_test method, invoking _load_test for test data loading.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant DeepmdDataSystem

    User->>DeepmdDataSystem: Set default_mesh
    DeepmdDataSystem->>DeepmdDataSystem: Initialize _default_mesh
    DeepmdDataSystem->>DeepmdDataSystem: Cache default_mesh values
    User->>DeepmdDataSystem: Request test_size
    DeepmdDataSystem->>DeepmdDataSystem: Calculate test size based on percentage
    DeepmdDataSystem->>DeepmdDataSystem: Load test data using _load_test
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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
deepmd_utils/utils/data_system.py (1)

246-248: Consider adding cache invalidation and validation

The current implementation has two potential issues:

  1. The @lru_cache on the getter could return stale data if the mesh is modified through the setter
  2. The setter lacks validation of the input value

Consider this improved implementation:

 @default_mesh.setter
 def default_mesh(self, value: List[np.ndarray]):
+    if not isinstance(value, list) or not all(isinstance(x, np.ndarray) for x in value):
+        raise ValueError("default_mesh must be a List[np.ndarray]")
+    if len(value) != self.nsystems:
+        raise ValueError(f"Expected {self.nsystems} meshes, got {len(value)}")
     self._default_mesh = value
+    # Clear the lru_cache to ensure fresh data
+    self.default_mesh.fget.cache_clear()
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📥 Commits

Reviewing files that changed from the base of the PR and between 440bb82 and 9117518.

📒 Files selected for processing (1)
  • deepmd_utils/utils/data_system.py (2 hunks)
🔇 Additional comments (2)
deepmd_utils/utils/data_system.py (2)

98-98: LGTM: Proper initialization of private attribute

The initialization of _default_mesh follows Python conventions for private attributes and is placed appropriately in the constructor.


237-244: LGTM: Well-implemented property with caching

The implementation correctly uses @lru_cache for performance optimization and implements lazy initialization of mesh values.

@njzjz njzjz linked an issue Nov 15, 2024 that may be closed by this pull request
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njzjz commented Nov 15, 2024

I am going to fix the Python tests at least, otherwise it's not known that whether the PR breaks other tests.

@njzjz njzjz requested a review from Copilot November 15, 2024 19:37

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Copilot reviewed 1 out of 1 changed files in this pull request and generated no suggestions.

Comments skipped due to low confidence (1)

deepmd_utils/utils/data_system.py:4

  • The word 'dat' should be corrected to 'data'.
The test dat of system with index `sys_idx` will be returned.
@njzjz njzjz closed this Nov 15, 2024
@njzjz njzjz reopened this Nov 15, 2024
@wanghan-iapcm wanghan-iapcm merged commit bab9258 into deepmodeling:r2 Nov 19, 2024
47 checks passed
@ChiahsinChu ChiahsinChu deleted the devel-setattr branch November 19, 2024 09:39
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[BUG] multi-task example does not work
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