From a17d67ac16548201fd204c3663867582cbcf343c Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Thu, 19 Sep 2024 12:02:11 +0200 Subject: [PATCH 1/8] Add abstraction for processing providers, implement unstructured provider --- .../ragbits-document-search/pyproject.toml | 4 +- .../src/ragbits/document_search/_main.py | 2 +- .../document_search/documents/document.py | 32 + .../document_search/documents/element.py | 2 +- .../ingestion/document_processor.py | 82 +- .../ingestion/providers/__init__.py | 0 .../ingestion/providers/base.py | 42 + .../ingestion/providers/dummy.py | 29 + .../ingestion/providers/unstructured.py | 97 +++ .../tests/unit/test_elements.py | 4 +- pyproject.toml | 1 + uv.lock | 813 ++++++++++++++++-- 12 files changed, 1000 insertions(+), 108 deletions(-) create mode 100644 packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/__init__.py create mode 100644 packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py create mode 100644 packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/dummy.py create mode 100644 packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py diff --git a/packages/ragbits-document-search/pyproject.toml b/packages/ragbits-document-search/pyproject.toml index 98c29ebd..4aec39ff 100644 --- a/packages/ragbits-document-search/pyproject.toml +++ b/packages/ragbits-document-search/pyproject.toml @@ -33,7 +33,9 @@ classifiers = [ ] dependencies = [ "numpy~=1.24.0", - "ragbits" + "ragbits", + "cryptography>=3.1", + "unstructured>=0.15.12", ] [tool.uv] diff --git a/packages/ragbits-document-search/src/ragbits/document_search/_main.py b/packages/ragbits-document-search/src/ragbits/document_search/_main.py index 2f38abe8..812b599e 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/_main.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/_main.py @@ -70,7 +70,7 @@ async def ingest_document(self, document: DocumentMeta) -> None: """ # TODO: This is a placeholder implementation. It should be replaced with a real implementation. - document_processor = DocumentProcessor() + document_processor = DocumentProcessor.from_config() elements = await document_processor.process(document) vectors = await self.embedder.embed_text([element.get_key() for element in elements]) entries = [element.to_vector_db_entry(vector) for element, vector in zip(elements, vectors)] diff --git a/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py b/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py index 8469d8eb..d7018f44 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py @@ -13,6 +13,22 @@ class DocumentType(str, Enum): MD = "md" TXT = "txt" + PDF = "pdf" + CSV = "csv" + DOC = "doc" + DOCX = "docx" + HTML = "html" + EPUB = "epub" + XLSX = "xlsx" + XLS = "xls" + ORG = "org" + ODT = "odt" + PPT = "ppt" + PPTX = "pptx" + RST = "rst" + RTF = "rtf" + TSV = "tsv" + XML = "xml" class DocumentMeta(BaseModel): @@ -63,6 +79,22 @@ def create_text_document_from_literal(cls, content: str) -> "DocumentMeta": source=LocalFileSource(path=Path(temp_file.name)), ) + @classmethod + def from_local_path(cls, local_path: Path) -> "DocumentMeta": + """ + Create a document metadata from a local path. + + Args: + local_path: The local path to the document. + + Returns: + The document metadata. + """ + return cls( + document_type=DocumentType(local_path.suffix[1:]), + source=LocalFileSource(path=local_path), + ) + class Document(BaseModel): """ diff --git a/packages/ragbits-document-search/src/ragbits/document_search/documents/element.py b/packages/ragbits-document-search/src/ragbits/document_search/documents/element.py index 3c02daeb..d521b7f7 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/documents/element.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/documents/element.py @@ -13,7 +13,7 @@ class Element(BaseModel, ABC): """ element_type: str - document: DocumentMeta + document_meta: DocumentMeta _elements_registry: ClassVar[dict[str, type["Element"]]] = {} diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py index f11b4277..7e908030 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py @@ -1,22 +1,67 @@ -""" -TODO: This module is mocked. To be deleted and replaced with a real implementation. -""" +from typing import Optional -from typing import List +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.documents.element import Element +from ragbits.document_search.ingestion.providers.base import BaseProvider +from ragbits.document_search.ingestion.providers.unstructured import UnstructuredProvider -from ragbits.document_search.documents.document import DocumentMeta, TextDocument -from ragbits.document_search.documents.element import Element, TextElement +ProvidersConfig = dict[DocumentType, BaseProvider] + +DEFAULT_PROVIDERS_CONFIG: ProvidersConfig = { + DocumentType.TXT: UnstructuredProvider(), + DocumentType.MD: UnstructuredProvider(), + DocumentType.PDF: UnstructuredProvider(), + DocumentType.DOCX: UnstructuredProvider(), + DocumentType.DOC: UnstructuredProvider(), + DocumentType.PPTX: UnstructuredProvider(), + DocumentType.PPT: UnstructuredProvider(), + DocumentType.XLSX: UnstructuredProvider(), + DocumentType.XLS: UnstructuredProvider(), + DocumentType.CSV: UnstructuredProvider(), + DocumentType.HTML: UnstructuredProvider(), + DocumentType.EPUB: UnstructuredProvider(), + DocumentType.ORG: UnstructuredProvider(), + DocumentType.ODT: UnstructuredProvider(), + DocumentType.RST: UnstructuredProvider(), + DocumentType.RTF: UnstructuredProvider(), + DocumentType.TSV: UnstructuredProvider(), + DocumentType.XML: UnstructuredProvider(), +} class DocumentProcessor: """ A class with an implementation of Document Processor, allowing to process documents. - - TODO: probably this one should be replaced with something more generic, - allowing for passing different processors for different document types. """ - async def process(self, document_meta: DocumentMeta) -> List[Element]: + def __init__(self, providers: dict[DocumentType, BaseProvider]): + self._providers = providers + + @classmethod + def from_config(cls, providers_config: Optional[ProvidersConfig] = None) -> "DocumentProcessor": + """ + Create a DocumentProcessor from a configuration. If the configuration is not provided, the default configuration + will be used. If the configuration is provided, it will be merged with the default configuration, overriding + the default values for the document types that are defined in the configuration. + Example of the configuration: + { + DocumentType.TXT: YourCustomProviderClass(), + DocumentType.PDF: UnstructuredProvider(), + } + + Args: + providers_config: The dictionary with the providers configuration, mapping the document types to the + provider class. + + Returns: + The DocumentProcessor. + """ + config = DEFAULT_PROVIDERS_CONFIG.copy() + config.update(providers_config if providers_config is not None else {}) + + return cls(providers=config) + + async def process(self, document_meta: DocumentMeta) -> list[Element]: """ Process the document. @@ -24,12 +69,15 @@ async def process(self, document_meta: DocumentMeta) -> List[Element]: document_meta: The document to process. Returns: - The processed elements. - """ - document = await document_meta.fetch() + The list of elements extracted from the document. - if isinstance(document, TextDocument): - # for now just return the whole document as a single element - return [TextElement(document=document_meta, content=document.content)] + Raises: + ValueError: If the provider for the document type is not defined in the configuration. + """ + provider = self._providers.get(document_meta.document_type) + if provider is None: + raise ValueError( + f"Provider for {document_meta.document_type} is not defined in the configuration:" f" {self._providers}" + ) - return [] + return await provider.process(document_meta) diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/__init__.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py new file mode 100644 index 00000000..8cf760a6 --- /dev/null +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py @@ -0,0 +1,42 @@ +from abc import ABC, abstractmethod + +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.documents.element import Element + + +class DocumentTypeNotSupportedError(Exception): + """Raised when the document type is not supported by the provider.""" + + def __init__(self, provider_name: str, document_type: DocumentType) -> None: + message = f"Document type {document_type} is not supported by the {provider_name}" + super().__init__(message) + + +class BaseProvider(ABC): + """A base class for the document processing providers.""" + + SUPPORTED_DOCUMENT_TYPES: set[DocumentType] + + @abstractmethod + async def process(self, document_meta: DocumentMeta) -> list[Element]: + """ + Process the document. + + Args: + document_meta: The document to process. + + Returns: + The list of elements extracted from the document. + """ + + def validate_document_type(self, document_type: DocumentType) -> None: + """Check if the provider supports the document type. + + Args: + document_type: The document type. + + Raises: + DocumentTypeNotSupportedError: If the document type is not supported. + """ + if document_type not in self.SUPPORTED_DOCUMENT_TYPES: + raise DocumentTypeNotSupportedError(provider_name=self.__class__.__name__, document_type=document_type) diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/dummy.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/dummy.py new file mode 100644 index 00000000..712f31a0 --- /dev/null +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/dummy.py @@ -0,0 +1,29 @@ +from ragbits.document_search.documents.document import DocumentMeta, DocumentType, TextDocument +from ragbits.document_search.documents.element import Element, TextElement +from ragbits.document_search.ingestion.providers.base import BaseProvider + + +class DummyProvider(BaseProvider): + """This is a mock provider that returns a TextElement with the content of the document. + It should be used for testing purposes only. + + TODO: Remove this provider after the implementation of the real providers. + """ + + SUPPORTED_DOCUMENT_TYPES = {DocumentType.TXT} + + async def process(self, document_meta: DocumentMeta) -> list[Element]: + """Process the text document. + + Args: + document_meta: The document to process. + + Returns: + List with a single TextElement containing the content of the document. + """ + self.validate_document_type(document_meta.document_type) + + document = await document_meta.fetch() + if isinstance(document, TextDocument): + return [TextElement(content=document.content, document_meta=document_meta)] + return [] diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py new file mode 100644 index 00000000..298e796f --- /dev/null +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py @@ -0,0 +1,97 @@ +import os +from io import BytesIO +from typing import Optional + +from unstructured.documents.elements import Element as UnstructuredElement +from unstructured.partition.api import partition_via_api + +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.documents.element import Element, TextElement +from ragbits.document_search.ingestion.providers.base import BaseProvider + +DEFAULT_PARTITION_KWARGS: dict = { + "strategy": "hi_res", + "languages": ["eng"], + "split_pdf_page": True, + "split_pdf_allow_failed": True, + "split_pdf_concurrency_level": 15, +} + +UNSTRUCTURED_API_KEY_ENV = "UNSTRUCTURED_API_KEY" +UNSTRUCTURED_API_URL_ENV = "UNSTRUCTURED_API_URL" + + +class UnstructuredProvider(BaseProvider): + """ + A provider that uses the Unstructured API to process the documents. + """ + + SUPPORTED_DOCUMENT_TYPES = { + DocumentType.TXT, + DocumentType.PDF, + DocumentType.DOCX, + DocumentType.DOC, + DocumentType.PPTX, + DocumentType.PPT, + DocumentType.XLSX, + DocumentType.XLS, + DocumentType.CSV, + DocumentType.HTML, + DocumentType.EPUB, + DocumentType.ORG, + DocumentType.ODT, + DocumentType.RST, + DocumentType.RTF, + DocumentType.TSV, + DocumentType.XML, + } + + def __init__(self, partition_kwargs: Optional[dict] = None): + """ + Initialize the UnstructuredProvider. + + Args: + partition_kwargs: The additional arguments for the partitioning. Refer to the Unstructured API documentation + for the available options: https://docs.unstructured.io/api-reference/api-services/api-parameters + """ + self.partition_kwargs = partition_kwargs or DEFAULT_PARTITION_KWARGS + + async def process(self, document_meta: DocumentMeta) -> list[Element]: + """ + Process the document using the Unstructured API. + + Args: + document_meta: The document to process. + + Returns: + The list of elements extracted from the document. + + Raises: + ValueError: If the UNSTRUCTURED_API_KEY or UNSTRUCTURED_API_URL environment variables are not set. + DocumentTypeNotSupportedError: If the document type is not supported. + + """ + self.validate_document_type(document_meta.document_type) + if (api_key := os.getenv(UNSTRUCTURED_API_KEY_ENV)) is None: + raise ValueError(f"{UNSTRUCTURED_API_KEY_ENV} environment variable is not set") + if (api_url := os.getenv(UNSTRUCTURED_API_URL_ENV)) is None: + raise ValueError(f"{UNSTRUCTURED_API_URL_ENV} environment variable is not set") + + document = await document_meta.fetch() + + # TODO: Currently this is a blocking call. It should be made async. + elements = partition_via_api( + file=BytesIO(document.local_path.read_bytes()), + metadata_filename=document.local_path.name, + api_key=api_key, + api_url=api_url, + **self.partition_kwargs, + ) + return [_to_text_element(element, document_meta) for element in elements] + + +def _to_text_element(element: UnstructuredElement, document_meta: DocumentMeta) -> TextElement: + return TextElement( + document_meta=document_meta, + content=element.text, + ) diff --git a/packages/ragbits-document-search/tests/unit/test_elements.py b/packages/ragbits-document-search/tests/unit/test_elements.py index 44ddb183..4561cd0f 100644 --- a/packages/ragbits-document-search/tests/unit/test_elements.py +++ b/packages/ragbits-document-search/tests/unit/test_elements.py @@ -26,5 +26,5 @@ def get_key(self) -> str: assert isinstance(element, MyElement) assert element.foo == "bar" assert element.get_key() == "barbar" - assert element.document.document_type == DocumentType.TXT - assert 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| 5 ++++- .../ragbits-document-search/tests/unit/test_providers.py | 0 .../tests/unit/test_simple_vector_store.py | 6 +++--- 5 files changed, 10 insertions(+), 10 deletions(-) create mode 100644 packages/ragbits-document-search/tests/unit/test_providers.py diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py index 8cf760a6..d046e7c7 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/base.py @@ -19,8 +19,7 @@ class BaseProvider(ABC): @abstractmethod async def process(self, document_meta: DocumentMeta) -> list[Element]: - """ - Process the document. + """Process the document. Args: document_meta: The document to process. diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py index 298e796f..e666cee8 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py @@ -47,8 +47,7 @@ class UnstructuredProvider(BaseProvider): } def __init__(self, partition_kwargs: Optional[dict] = None): - """ - Initialize the UnstructuredProvider. + """Initialize the UnstructuredProvider. Args: partition_kwargs: The additional arguments for the partitioning. Refer to the Unstructured API documentation @@ -57,8 +56,7 @@ def __init__(self, partition_kwargs: Optional[dict] = None): self.partition_kwargs = partition_kwargs or DEFAULT_PARTITION_KWARGS async def process(self, document_meta: DocumentMeta) -> list[Element]: - """ - Process the document using the Unstructured API. + """Process the document using the Unstructured API. Args: document_meta: The document to process. diff --git a/packages/ragbits-document-search/tests/unit/test_elements.py b/packages/ragbits-document-search/tests/unit/test_elements.py index 4561cd0f..bb213ca7 100644 --- a/packages/ragbits-document-search/tests/unit/test_elements.py +++ b/packages/ragbits-document-search/tests/unit/test_elements.py @@ -18,7 +18,10 @@ def get_key(self) -> str: metadata={ "element_type": "custom_element", "foo": "bar", - "document": {"document_type": "txt", "source": {"source_type": "local_file", "path": "/example/path"}}, + "document_meta": { + "document_type": "txt", + "source": {"source_type": "local_file", "path": "/example/path"}, + }, }, ) ) diff --git a/packages/ragbits-document-search/tests/unit/test_providers.py b/packages/ragbits-document-search/tests/unit/test_providers.py new file mode 100644 index 00000000..e69de29b diff --git a/packages/ragbits-document-search/tests/unit/test_simple_vector_store.py b/packages/ragbits-document-search/tests/unit/test_simple_vector_store.py index bad25403..4c47bc96 100644 --- a/packages/ragbits-document-search/tests/unit/test_simple_vector_store.py +++ b/packages/ragbits-document-search/tests/unit/test_simple_vector_store.py @@ -9,10 +9,10 @@ async def test_simple_vector_store(): store = InMemoryVectorStore() - document = DocumentMeta(document_type=DocumentType.TXT, source=LocalFileSource(path=Path("test.txt"))) + document_meta = DocumentMeta(document_type=DocumentType.TXT, source=LocalFileSource(path=Path("test.txt"))) elements = [ - (TextElement(content="dog", document=document), [0.5, 0.5]), - (TextElement(content="cat", document=document), [0.6, 0.6]), + (TextElement(content="dog", document_meta=document_meta), [0.5, 0.5]), + (TextElement(content="cat", document_meta=document_meta), [0.6, 0.6]), ] entries = [element[0].to_vector_db_entry(vector=element[1]) for element in elements] From dc51638611ac0a87d68bc8b2ad37d3491a505dbd Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Thu, 19 Sep 2024 13:55:18 +0200 Subject: [PATCH 3/8] Add tests for providers --- .../document_search/documents/document.py | 2 + .../ingestion/providers/unstructured.py | 1 + .../ragbits-document-search/tests/helpers.py | 5 ++ .../tests/unit/test_document_processor.py | 55 ++++++++++++++ .../tests/unit/test_providers.py | 75 +++++++++++++++++++ 5 files changed, 138 insertions(+) create mode 100644 packages/ragbits-document-search/tests/helpers.py create mode 100644 packages/ragbits-document-search/tests/unit/test_document_processor.py diff --git a/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py b/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py index d7018f44..335e37fc 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/documents/document.py @@ -30,6 +30,8 @@ class DocumentType(str, Enum): TSV = "tsv" XML = "xml" + UNKNOWN = "unknown" + class DocumentMeta(BaseModel): """ diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py index e666cee8..037bed34 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/providers/unstructured.py @@ -28,6 +28,7 @@ class UnstructuredProvider(BaseProvider): SUPPORTED_DOCUMENT_TYPES = { DocumentType.TXT, + DocumentType.MD, DocumentType.PDF, DocumentType.DOCX, DocumentType.DOC, diff --git a/packages/ragbits-document-search/tests/helpers.py b/packages/ragbits-document-search/tests/helpers.py new file mode 100644 index 00000000..4ed552e5 --- /dev/null +++ b/packages/ragbits-document-search/tests/helpers.py @@ -0,0 +1,5 @@ +import os + + +def env_vars_not_set(env_vars: list[str]) -> bool: + return all([os.environ.get(env_var) is None for env_var in env_vars]) diff --git a/packages/ragbits-document-search/tests/unit/test_document_processor.py b/packages/ragbits-document-search/tests/unit/test_document_processor.py new file mode 100644 index 00000000..0e930ff1 --- /dev/null +++ b/packages/ragbits-document-search/tests/unit/test_document_processor.py @@ -0,0 +1,55 @@ +from pathlib import Path + +import pytest + +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.ingestion.document_processor import DocumentProcessor +from ragbits.document_search.ingestion.providers.dummy import DummyProvider +from ragbits.document_search.ingestion.providers.unstructured import ( + UNSTRUCTURED_API_KEY_ENV, + UNSTRUCTURED_API_URL_ENV, + UnstructuredProvider, +) + +from ..helpers import env_vars_not_set + + +async def test_document_processor_processes_text_document_with_dummy_provider(): + providers_config = {DocumentType.TXT: DummyProvider()} + document_processor = DocumentProcessor.from_config(providers_config) + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George") + + elements = await document_processor.process(document_meta) + + assert isinstance(document_processor._providers[DocumentType.TXT], DummyProvider) + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George" + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_document_processor_processes_text_document_with_unstructured_provider(): + document_processor = DocumentProcessor.from_config() + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + + elements = await document_processor.process(document_meta) + + assert isinstance(document_processor._providers[DocumentType.TXT], UnstructuredProvider) + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George" + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_document_processor_processes_md_document_with_unstructured_provider(): + document_processor = DocumentProcessor.from_config() + document_meta = DocumentMeta.from_local_path(Path(__file__).parent.parent.parent.parent.parent / "README.md") + + elements = await document_processor.process(document_meta) + + assert len(elements) > 0 + assert elements[0].content == "Ragbits" diff --git a/packages/ragbits-document-search/tests/unit/test_providers.py b/packages/ragbits-document-search/tests/unit/test_providers.py index e69de29b..7da2570c 100644 --- a/packages/ragbits-document-search/tests/unit/test_providers.py +++ b/packages/ragbits-document-search/tests/unit/test_providers.py @@ -0,0 +1,75 @@ +import pytest +from dotenv import load_dotenv + +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.ingestion.providers.base import DocumentTypeNotSupportedError +from ragbits.document_search.ingestion.providers.unstructured import ( + DEFAULT_PARTITION_KWARGS, + UNSTRUCTURED_API_KEY_ENV, + UNSTRUCTURED_API_URL_ENV, + UnstructuredProvider, +) + +from ..helpers import env_vars_not_set + +load_dotenv() + + +@pytest.mark.parametrize("document_type", UnstructuredProvider.SUPPORTED_DOCUMENT_TYPES) +def test_unsupported_provider_validates_supported_document_types_passes(document_type: DocumentType): + UnstructuredProvider().validate_document_type(document_type) + + +def test_unsupported_provider_validates_supported_document_types_fails(): + with pytest.raises(DocumentTypeNotSupportedError) as err: + UnstructuredProvider().validate_document_type(DocumentType.UNKNOWN) + + assert "Document type unknown is not supported by the UnstructuredProvider" in str(err.value) + + +async def test_unstructured_provider_raises_value_error_when_api_key_not_set(): + with pytest.raises(ValueError) as err: + await UnstructuredProvider().process( + DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + ) + + assert f"{UNSTRUCTURED_API_KEY_ENV} environment variable is not set" in str(err.value) + + +async def test_unstructured_provider_raises_value_error_when_api_url_not_set(monkeypatch: pytest.MonkeyPatch): + monkeypatch.setenv(UNSTRUCTURED_API_KEY_ENV, "dummy_key") + with pytest.raises(ValueError) as err: + await UnstructuredProvider().process( + DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + ) + + assert f"{UNSTRUCTURED_API_URL_ENV} environment variable is not set" in str(err.value) + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_unstructured_provider_document_with_default_partition_kwargs(): + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + unstructured_provider = UnstructuredProvider() + elements = await unstructured_provider.process(document_meta) + + assert unstructured_provider.partition_kwargs == DEFAULT_PARTITION_KWARGS + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George." + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_unstructured_provider_document_with_custom_partition_kwargs(): + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + partition_kwargs = {"languages": ["pl"], "strategy": "fast"} + unstructured_provider = UnstructuredProvider(partition_kwargs=partition_kwargs) + elements = await unstructured_provider.process(document_meta) + + assert unstructured_provider.partition_kwargs == partition_kwargs + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George." From 6d0f47b07d48b194462094dfcbe3d4a7160dab10 Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Thu, 19 Sep 2024 13:57:34 +0200 Subject: [PATCH 4/8] Get rid of redundant deps --- packages/ragbits-document-search/pyproject.toml | 1 - uv.lock | 2 -- 2 files changed, 3 deletions(-) diff --git a/packages/ragbits-document-search/pyproject.toml b/packages/ragbits-document-search/pyproject.toml index 4aec39ff..ff921a76 100644 --- a/packages/ragbits-document-search/pyproject.toml +++ b/packages/ragbits-document-search/pyproject.toml @@ -34,7 +34,6 @@ classifiers = [ dependencies = [ "numpy~=1.24.0", "ragbits", - "cryptography>=3.1", "unstructured>=0.15.12", ] diff --git a/uv.lock b/uv.lock index ddb21f0d..78b25599 100644 --- a/uv.lock +++ b/uv.lock @@ -2233,7 +2233,6 @@ name = "ragbits-document-search" version = "0.1.0" source = { editable = "packages/ragbits-document-search" } dependencies = [ - { name = "cryptography" }, { name = "numpy" }, { name = "ragbits" }, { name = "unstructured" }, @@ -2251,7 +2250,6 @@ dev = [ [package.metadata] requires-dist = [ - { name = "cryptography", specifier = ">=3.1" }, { name = "numpy", specifier = "~=1.24.0" }, { name = "ragbits", editable = "packages/ragbits-core" }, { name = "unstructured", specifier = ">=0.15.12" }, From 51629a3d2d376c7e4832b29fe9beccdc543543fc Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Thu, 19 Sep 2024 14:17:12 +0200 Subject: [PATCH 5/8] Fix tests --- .libraries-whitelist.txt | 3 ++- .../src/ragbits/document_search/_main.py | 5 +++-- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/.libraries-whitelist.txt b/.libraries-whitelist.txt index 5bd0d5a4..06516cf0 100644 --- a/.libraries-whitelist.txt +++ b/.libraries-whitelist.txt @@ -1,2 +1,3 @@ pkg_resources -tiktoken \ No newline at end of file +tiktoken +chardet diff --git a/packages/ragbits-document-search/src/ragbits/document_search/_main.py b/packages/ragbits-document-search/src/ragbits/document_search/_main.py index 812b599e..9034fb3a 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/_main.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/_main.py @@ -1,7 +1,8 @@ from ragbits.core.embeddings.base import Embeddings -from ragbits.document_search.documents.document import DocumentMeta +from ragbits.document_search.documents.document import DocumentMeta, DocumentType from ragbits.document_search.documents.element import Element from ragbits.document_search.ingestion.document_processor import DocumentProcessor +from ragbits.document_search.ingestion.providers.dummy import DummyProvider from ragbits.document_search.retrieval.rephrasers.base import QueryRephraser from ragbits.document_search.retrieval.rephrasers.noop import NoopQueryRephraser from ragbits.document_search.retrieval.rerankers.base import Reranker @@ -70,7 +71,7 @@ async def ingest_document(self, document: DocumentMeta) -> None: """ # TODO: This is a placeholder implementation. It should be replaced with a real implementation. - document_processor = DocumentProcessor.from_config() + document_processor = DocumentProcessor.from_config({DocumentType.TXT: DummyProvider()}) elements = await document_processor.process(document) vectors = await self.embedder.embed_text([element.get_key() for element in elements]) entries = [element.to_vector_db_entry(vector) for element, vector in zip(elements, vectors)] From 1332c74d98363d87ff38824eb30b51408eb3cf41 Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Mon, 23 Sep 2024 11:57:23 +0200 Subject: [PATCH 6/8] Move unstructured tests to integration tests folder --- .../tests/integration/test_unstructured.py | 72 +++++++++++++++++++ .../tests/unit/test_document_processor.py | 40 ----------- .../tests/unit/test_providers.py | 32 --------- 3 files changed, 72 insertions(+), 72 deletions(-) create mode 100644 packages/ragbits-document-search/tests/integration/test_unstructured.py diff --git a/packages/ragbits-document-search/tests/integration/test_unstructured.py b/packages/ragbits-document-search/tests/integration/test_unstructured.py new file mode 100644 index 00000000..a48c1f49 --- /dev/null +++ b/packages/ragbits-document-search/tests/integration/test_unstructured.py @@ -0,0 +1,72 @@ +from pathlib import Path + +import pytest + +from ragbits.document_search.documents.document import DocumentMeta, DocumentType +from ragbits.document_search.ingestion.document_processor import DocumentProcessor +from ragbits.document_search.ingestion.providers.unstructured import ( + DEFAULT_PARTITION_KWARGS, + UNSTRUCTURED_API_KEY_ENV, + UNSTRUCTURED_API_URL_ENV, + UnstructuredProvider, +) + +from ..helpers import env_vars_not_set + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_document_processor_processes_text_document_with_unstructured_provider(): + document_processor = DocumentProcessor.from_config() + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + + elements = await document_processor.process(document_meta) + + assert isinstance(document_processor._providers[DocumentType.TXT], UnstructuredProvider) + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George" + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_document_processor_processes_md_document_with_unstructured_provider(): + document_processor = DocumentProcessor.from_config() + document_meta = DocumentMeta.from_local_path(Path(__file__).parent.parent.parent.parent.parent / "README.md") + + elements = await document_processor.process(document_meta) + + assert len(elements) > 0 + assert elements[0].content == "Ragbits" + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_unstructured_provider_document_with_default_partition_kwargs(): + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + unstructured_provider = UnstructuredProvider() + elements = await unstructured_provider.process(document_meta) + + assert unstructured_provider.partition_kwargs == DEFAULT_PARTITION_KWARGS + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George." + + +@pytest.mark.skipif( + env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), + reason="Unstructured API environment variables not set", +) +async def test_unstructured_provider_document_with_custom_partition_kwargs(): + document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") + partition_kwargs = {"languages": ["pl"], "strategy": "fast"} + unstructured_provider = UnstructuredProvider(partition_kwargs=partition_kwargs) + elements = await unstructured_provider.process(document_meta) + + assert unstructured_provider.partition_kwargs == partition_kwargs + assert len(elements) == 1 + assert elements[0].content == "Name of Peppa's brother is George." diff --git a/packages/ragbits-document-search/tests/unit/test_document_processor.py b/packages/ragbits-document-search/tests/unit/test_document_processor.py index 0e930ff1..f329e8b3 100644 --- a/packages/ragbits-document-search/tests/unit/test_document_processor.py +++ b/packages/ragbits-document-search/tests/unit/test_document_processor.py @@ -1,17 +1,6 @@ -from pathlib import Path - -import pytest - from ragbits.document_search.documents.document import DocumentMeta, DocumentType from ragbits.document_search.ingestion.document_processor import DocumentProcessor from ragbits.document_search.ingestion.providers.dummy import DummyProvider -from ragbits.document_search.ingestion.providers.unstructured import ( - UNSTRUCTURED_API_KEY_ENV, - UNSTRUCTURED_API_URL_ENV, - UnstructuredProvider, -) - -from ..helpers import env_vars_not_set async def test_document_processor_processes_text_document_with_dummy_provider(): @@ -24,32 +13,3 @@ async def test_document_processor_processes_text_document_with_dummy_provider(): assert isinstance(document_processor._providers[DocumentType.TXT], DummyProvider) assert len(elements) == 1 assert elements[0].content == "Name of Peppa's brother is George" - - -@pytest.mark.skipif( - env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), - reason="Unstructured API environment variables not set", -) -async def test_document_processor_processes_text_document_with_unstructured_provider(): - document_processor = DocumentProcessor.from_config() - document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") - - elements = await document_processor.process(document_meta) - - assert isinstance(document_processor._providers[DocumentType.TXT], UnstructuredProvider) - assert len(elements) == 1 - assert elements[0].content == "Name of Peppa's brother is George" - - -@pytest.mark.skipif( - env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), - reason="Unstructured API environment variables not set", -) -async def test_document_processor_processes_md_document_with_unstructured_provider(): - document_processor = DocumentProcessor.from_config() - document_meta = DocumentMeta.from_local_path(Path(__file__).parent.parent.parent.parent.parent / "README.md") - - elements = await document_processor.process(document_meta) - - assert len(elements) > 0 - assert elements[0].content == "Ragbits" diff --git a/packages/ragbits-document-search/tests/unit/test_providers.py b/packages/ragbits-document-search/tests/unit/test_providers.py index 7da2570c..5bde8e52 100644 --- a/packages/ragbits-document-search/tests/unit/test_providers.py +++ b/packages/ragbits-document-search/tests/unit/test_providers.py @@ -4,14 +4,11 @@ from ragbits.document_search.documents.document import DocumentMeta, DocumentType from ragbits.document_search.ingestion.providers.base import DocumentTypeNotSupportedError from ragbits.document_search.ingestion.providers.unstructured import ( - DEFAULT_PARTITION_KWARGS, UNSTRUCTURED_API_KEY_ENV, UNSTRUCTURED_API_URL_ENV, UnstructuredProvider, ) -from ..helpers import env_vars_not_set - load_dotenv() @@ -44,32 +41,3 @@ async def test_unstructured_provider_raises_value_error_when_api_url_not_set(mon ) assert f"{UNSTRUCTURED_API_URL_ENV} environment variable is not set" in str(err.value) - - -@pytest.mark.skipif( - env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), - reason="Unstructured API environment variables not set", -) -async def test_unstructured_provider_document_with_default_partition_kwargs(): - document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") - unstructured_provider = UnstructuredProvider() - elements = await unstructured_provider.process(document_meta) - - assert unstructured_provider.partition_kwargs == DEFAULT_PARTITION_KWARGS - assert len(elements) == 1 - assert elements[0].content == "Name of Peppa's brother is George." - - -@pytest.mark.skipif( - env_vars_not_set([UNSTRUCTURED_API_URL_ENV, UNSTRUCTURED_API_KEY_ENV]), - reason="Unstructured API environment variables not set", -) -async def test_unstructured_provider_document_with_custom_partition_kwargs(): - document_meta = DocumentMeta.create_text_document_from_literal("Name of Peppa's brother is George.") - partition_kwargs = {"languages": ["pl"], "strategy": "fast"} - unstructured_provider = UnstructuredProvider(partition_kwargs=partition_kwargs) - elements = await unstructured_provider.process(document_meta) - - assert unstructured_provider.partition_kwargs == partition_kwargs - assert len(elements) == 1 - assert elements[0].content == "Name of Peppa's brother is George." From 5e9f1c270735c4fe44ee7e4f689137333efea7dd Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Mon, 23 Sep 2024 12:02:52 +0200 Subject: [PATCH 7/8] Add missing __init__.py --- packages/ragbits-document-search/tests/integration/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 packages/ragbits-document-search/tests/integration/__init__.py diff --git a/packages/ragbits-document-search/tests/integration/__init__.py b/packages/ragbits-document-search/tests/integration/__init__.py new file mode 100644 index 00000000..e69de29b From 76ff7812f56e3e6f126ca541e90880ad1fbb7799 Mon Sep 17 00:00:00 2001 From: Alan Konarski Date: Mon, 23 Sep 2024 15:33:57 +0200 Subject: [PATCH 8/8] Use deecopy on dict with default params --- .../ragbits/document_search/ingestion/document_processor.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py index 7e908030..9a4f8ae5 100644 --- a/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py +++ b/packages/ragbits-document-search/src/ragbits/document_search/ingestion/document_processor.py @@ -1,3 +1,4 @@ +import copy from typing import Optional from ragbits.document_search.documents.document import DocumentMeta, DocumentType @@ -56,7 +57,7 @@ def from_config(cls, providers_config: Optional[ProvidersConfig] = None) -> "Doc Returns: The DocumentProcessor. """ - config = DEFAULT_PROVIDERS_CONFIG.copy() + config = copy.deepcopy(DEFAULT_PROVIDERS_CONFIG) config.update(providers_config if providers_config is not None else {}) return cls(providers=config)