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fix bug in virsorter2 and iphop
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rujinlong committed Apr 30, 2023
1 parent 222364d commit 41d1e98
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2 changes: 1 addition & 1 deletion CITATIONS.md
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- [abricate](https://github.com/tseemann/abricate)

- [iPHoP](https://bitbucket.org/srouxjgi/iphop/src/main/)
> Roux S, Camargo A P, Coutinho F H, et al. iPHoP: an integrated machine-learning framework to maximize host prediction for metagenome-assembled virus genomes[J]. bioRxiv, 2022.
> Roux S, Camargo AP, Coutinho FH, Dabdoub SM, Dutilh BE, Nayfach S, Tritt A. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS biology. 2023 Apr 21;21(4):e3002083.
- [bacphlip](https://github.com/adamhockenberry/bacphlip)
> Hockenberry A J, Wilke C O. BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains[J]. PeerJ, 2021, 9: e11396.
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4 changes: 2 additions & 2 deletions conf/modules.config
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Expand Up @@ -53,7 +53,7 @@ process {
}

withLabel: viroprofiler_host {
container = 'denglab/viroprofiler-host:v0.2'
container = 'denglab/viroprofiler-host:v0.1'
}

withLabel: viroprofiler_replicyc {
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}

withLabel: viroprofiler_virsorter2 {
container = 'denglab/viroprofiler-base:v0.2.2'
container = 'denglab/viroprofiler-virsorter2:v0.2.2'
}

withLabel: viroprofiler_vpfkit {
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