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obi.yml
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obi.yml
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# PURL configuration for http://purl.obolibrary.org/obo/obi
idspace: OBI
base_url: /obo/obi
products:
- obi.owl: https://raw.githubusercontent.com/obi-ontology/obi/v2018-08-27/obi.owl
- obi.obo: http://ontologies.berkeleybop.org/obi.obo
term_browser: ontobee
example_terms:
- OBI_0000070
entries:
### Current Releases
- exact: /obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-08-27/obi_core.owl
- exact: /obi_IEDBview.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi_iedb.owl
- exact: /release-notes.html
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-08-27/README.md
- exact: /webService.owl
replacement: https://raw.githubusercontent.com/obi-webservice/OBIws/master/ontology/release/v1.1/webService.owl
- exact: /NIAID-GSC-BRC.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/NIAID-GSCID-BRC-view/20150413/NIAID-GSC-BRC.owl
- exact: /obi_FGED.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2013-10-25/obi_FGED.owl
# TODO: This is out of date and in the wrong place.
- exact: /obi.obo
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-07-01/merged/obi_cleaned_merged_inferred.obo
### Dated OBI Releases
- exact: /2009-11-02/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2009-11-02/merged/merged-obi.owl
- exact: /2009-11-06/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2009-11-06/merged/merged-obi.owl
- exact: /2009-11-06/obi.obo
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2009-11-06/merged/obi.obo
- exact: /2009-11-06/IEDB-use-case.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2009-11-06/branches/IEDB-use-case.owl
- exact: /2009-11-06/investigation-use-case.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2009-11-06/branches/investigation-use-case.owl
- exact: /2010-10-26/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2010-10-26/merged/merged-obi.owl
- exact: /2011-04-20/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2011-04-20/merged/merged-obi-comments.owl
- exact: /2011-07-20/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2011-07-20/merged/merged-obi-comments.owl
- exact: /2011-12-13/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-01-18/merged/obi_woIEDB_comments.owl
- exact: /2011-12-13/obi_IEDBview.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-01-18/merged/obi_IEDBview.owl
- exact: /2012-03-29/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-03-29/merged/merged-obi-comments.owl
- exact: /2012-03-29/obi_IEDBview.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-03-29/merged/obi_IEDBview.owl
- exact: /2012-03-29/obi.obo
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-03-29/merged/merged-all_mod.obo
- exact: /2012-07-01/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-07-01/merged/merged-obi-comments.owl
- exact: /2012-07-01/obi.obo
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2012-07-01/merged/obi_cleaned_merged_inferred.obo
- exact: /2013-10-25/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2013-10-25/obi_core.owl
- exact: /2013-10-25/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2013-10-25/obi.owl
- exact: /2014-03-29/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-03-29/obi.owl
- exact: /2014-03-29/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-03-29/obi_core.owl
- exact: /2014-08-18/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-08-18/obi.owl
- exact: /2014-08-18/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-08-18/obi_core.owl
- exact: /2014-12-03/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-12-03/obi.owl
- exact: /2014-12-03/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2014-12-03/obi_core.owl
- exact: /2015-03-17/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-03-17/obi.owl
- exact: /2015-03-17/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-03-17/obi_core.owl
- exact: /2015-04-13/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-04-13/obi.owl
- exact: /2015-04-13/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-04-13/obi_core.owl
- exact: /2015-09-15/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-09-15/obi.owl
- exact: /2015-09-15/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-09-15/obi_core.owl
- exact: /2015-10-20/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-10-20/obi.owl
- exact: /2015-10-20/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-10-20/obi_core.owl
- exact: /2015-12-07/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-12-07/obi.owl
- exact: /2015-12-07/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2015-12-07/obi_core.owl
- exact: /2016-06-30/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2016-06-30/obi.owl
- exact: /2016-06-30/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2016-06-30/obi_core.owl
- exact: /2016-10-11/obi.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2016-10-11/obi.owl
- exact: /2016-10-11/obi_core.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/2016-10-11/obi_core.owl
- exact: /2017-02-22/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi.owl
- exact: /2017-02-22/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi_core.owl
- exact: /2017-09-03/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-09-03/obi.owl
- exact: /2017-09-03/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-09-03/obi_core.owl
- exact: /2017-11-07/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-11-07/obi.owl
- exact: /2017-11-07/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2017-11-07/obi_core.owl
- exact: /2018-02-12/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-02-12/obi.owl
- exact: /2018-02-12/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-02-12/obi_core.owl
- exact: /2018-05-23/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-05-23/obi.owl
- exact: /2018-05-23/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-05-23/obi_core.owl
- exact: /2018-08-27/obi.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-08-27/obi.owl
- exact: /2018-08-27/obi_core.owl
replacement: https://raw.githubusercontent.com/obi-ontology/obi/v2018-08-27/obi_core.owl
### Web Service Releases
- exact: /v1.1/webService.owl
replacement: https://raw.githubusercontent.com/obi-webservice/OBIws/master/ontology/release/v1.1/webService.owl
- exact: /v1.0/webService.owl
replacement: https://raw.githubusercontent.com/obi-webservice/OBIws/master/ontology/release/v1.0/webService.owl
- exact: /v0.9/webService.owl
replacement: https://raw.githubusercontent.com/obi-webservice/OBIws/master/ontology/release/v0.9/webService.owl
# NIAID-GSC-BRC Releases
- exact: /20140106/NIAID-GSC-BRC.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/NIAID-GSCID-BRC-view/20140105/NIAID-GSC-BRC.owl
- exact: /20150413/NIAID-GSC-BRC.owl
replacement: http://svn.code.sf.net/p/obi/code/releases/NIAID-GSCID-BRC-view/20150413/NIAID-GSC-BRC.owl
### Wiki Pages
- exact: /wiki
replacement: http://obi-ontology.org
- exact: /wiki/MinimalMetadata
replacement: https://github.com/obi-ontology/obi-legacy-wiki/tree/master/pages/OBI_Minimal_metadata.mw
- prefix: /wiki/
replacement: https://github.com/obi-ontology/obi-legacy-wiki/tree/master/pages/
### Documentation Pages and Redirects
- exact: /homepage
replacement: http://obi-ontology.org/
- prefix: /about/
replacement: http://www.ontobee.org/browser/rdf.php?o=OBI&iri=http://purl.obolibrary.org/obo/
- prefix: /doc/
replacement: http://obi.svn.sourceforge.net/svnroot/obi/trunk/docs/
- exact: /tracker
replacement: https://github.com/obi-ontology/obi/issues
- exact: /project
replacement: http://sw.neurocommons.org/obi-303/project.rdf
- exact: /calendar
replacement: http://www.google.com/calendar/embed?src=p8auq0a930und9nugj44p988e4%40group.calendar.google.com&ctz=America/New_York
- exact: /jowl
replacement: http://jowl.ontologyonline.org/obi.html
- exact: /policy/metadata
replacement: https://github.com/obi-ontology/obi-legacy-wiki/tree/master/pages/OBI_Minimal_metadata.mw
- exact: /Technical_Reports
replacement: https://github.com/obi-ontology/obi-legacy-wiki/tree/master/pages/Technical_Reports.mw
- exact: /supplementary/protege-qtt-2009.zip
replacement: http://www.stanford.edu/~sunid/OBI/Protege_3.4.2.zip
- exact: /report.html
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2010-10-26/merged/newClasses.html
- exact: /protege/obi.pprj
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/obsolete-protege-message.html
- exact: /protege/obi.owl
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/obsolete-protege-message.html
- exact: /owldoc
replacement: http://owl.cs.manchester.ac.uk/browser/classes/830966544/?session=12cbe539878-8862-12cbe54e7be
- prefix: /protege/
replacement: http://obi.svn.sourceforge.net/svnroot/obi/releases/2008-11-28/merged/protege/
- exact: /browse
replacement: http://www.ontobee.org/browser/index.php?o=OBI
- prefix: /page/
replacement: http://www.ontobee.org/browser/rdf.php?o=OBI&iri=
### Development Pages and Redirects
- prefix: /dev/import/
replacement: https://raw.githubusercontent.com/obi-ontology/obi/master/src/ontology/OntoFox_outputs/
tests:
- from: /dev/import/OBO_imports.owl
to: https://raw.githubusercontent.com/obi-ontology/obi/master/src/ontology/OntoFox_outputs/OBO_imports.owl
- prefix: /dev/
replacement: https://raw.githubusercontent.com/obi-ontology/obi/master/src/ontology/
tests:
- from: /dev/obi-edit.owl
to: https://raw.githubusercontent.com/obi-ontology/obi/master/src/ontology/obi-edit.owl
- prefix: /branches/
replacement: http://obi.svn.sourceforge.net/svnroot/obi/trunk/src/ontology/branches/
- exact: /repository
replacement: https://github.com/obi-ontology/obi
- prefix: /repository/
replacement: http://obi.svn.sourceforge.net/svnroot/obi/
# WARN: This entry matches everything under /obo/obi/*! It must be last on the list.
- prefix: /
replacement: http://obi.svn.sourceforge.net/svnroot/obi/trunk/src/ontology/branches/