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minor fix
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simoncmo committed Dec 10, 2023
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3 changes: 1 addition & 2 deletions Figure3/3_Pathway/script/GSEA_analysis.r
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Expand Up @@ -28,8 +28,7 @@ library(Seurat)
library(enrichplot)
library(patchwork)

out_path_analysis = str_glue('{out_path}/1A_subclone_vs_TME_plot')
#ST_microregion_deg_list
out_path_analysis = str_glue('{out_path}/3_Pathway')
st_groupby = 'genetic_clone'

## -------- This GSEA workflow is generic and can be apply to many datasets -------- ##
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