diff --git a/Figure3/3_Pathway/script/GSEA_analysis.r b/Figure3/3_Pathway/script/GSEA_analysis.r index a6c8997..cc65c45 100644 --- a/Figure3/3_Pathway/script/GSEA_analysis.r +++ b/Figure3/3_Pathway/script/GSEA_analysis.r @@ -28,8 +28,7 @@ library(Seurat) library(enrichplot) library(patchwork) -out_path_analysis = str_glue('{out_path}/1A_subclone_vs_TME_plot') -#ST_microregion_deg_list +out_path_analysis = str_glue('{out_path}/3_Pathway') st_groupby = 'genetic_clone' ## -------- This GSEA workflow is generic and can be apply to many datasets -------- ##