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RCTD on multiple spatially resolved transcriptomic datasets? Is it possible? #201

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MatteoRiva95 opened this issue May 9, 2024 · 0 comments

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@MatteoRiva95
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Good morning everyone,

I would like to perform RCTD on more than one slice, merging them in an unique seurat spatial object.
Is it possible to do it? If yes, how?
I am following this tutorial, in particular the last section ("Slide-seq --> Spatial deconvolution using RCTD"):

https://satijalab.org/seurat/articles/spatial_vignette#slide-seq

Thank you so much in advance for your help!

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