fix docs

drostlab · Oct 3, 2024 · 1a1a04e · 1a1a04e
1 parent 49892a2
commit 1a1a04e
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Showing 24 changed files with 146 additions and 155 deletions.
diff --git a/R/tf.R b/R/tf.R
@@ -77,10 +77,7 @@
 #' # plotting the TAI using log2 transformed expression levels
 #' # and performing the Flat Line Test to obtain the p-value
 #' PlotSignature(ExpressionSet = tf(PhyloExpressionSetExample, log2),
-#'             permutations = 10, 
-#'             type          = "l", 
-#'             lwd           = 5, 
-#'             TestStatistic = "FlatLineTest")
+#'             permutations = 1000)
 #' 
 #' 
 #' 

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,7 +8,7 @@ articles:
   Intermediate: Intermediate.html
   Introduction: Introduction.html
   Phylostratigraphy: Phylostratigraphy.html
-last_built: 2024-10-03T15:57Z
+last_built: 2024-10-03T16:07Z
 urls:
   reference: https://drostlab.github.io/myTAI/reference
   article: https://drostlab.github.io/myTAI/articles
diff --git a/docs/reference/EarlyConservationTest.html b/docs/reference/EarlyConservationTest.html
diff --git a/docs/reference/FlatLineTest.html b/docs/reference/FlatLineTest.html
diff --git a/docs/reference/LateConservationTest.html b/docs/reference/LateConservationTest.html
diff --git a/docs/reference/PairwiseTest.html b/docs/reference/PairwiseTest.html
diff --git a/docs/reference/PlotPattern-2.png b/docs/reference/PlotPattern-2.png
diff --git a/docs/reference/PlotPattern-3.png b/docs/reference/PlotPattern-3.png
diff --git a/docs/reference/PlotPattern-4.png b/docs/reference/PlotPattern-4.png
diff --git a/docs/reference/PlotPattern-5.png b/docs/reference/PlotPattern-5.png
diff --git a/docs/reference/PlotPattern.html b/docs/reference/PlotPattern.html
diff --git a/docs/reference/PlotSignature-1.png b/docs/reference/PlotSignature-1.png
diff --git a/docs/reference/ReductiveHourglassTest.html b/docs/reference/ReductiveHourglassTest.html
diff --git a/docs/reference/ReverseHourglassTest.html b/docs/reference/ReverseHourglassTest.html
diff --git a/docs/reference/Rplot004.png b/docs/reference/Rplot004.png
diff --git a/docs/reference/Rplot005.png b/docs/reference/Rplot005.png