From 5880bf11a81ca56cb5ef9a4437db4b81b0cf19b3 Mon Sep 17 00:00:00 2001
From: Howard Soh <hsoh@seneca.rap.ucar.edu>
Date: Mon, 23 Dec 2024 12:22:23 +0000
Subject: [PATCH] #3007 Set bad_data_int to qc_buf

---
 src/tools/other/ioda2nc/ioda2nc.cc | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/tools/other/ioda2nc/ioda2nc.cc b/src/tools/other/ioda2nc/ioda2nc.cc
index c47583c046..4c462afb7c 100644
--- a/src/tools/other/ioda2nc/ioda2nc.cc
+++ b/src/tools/other/ioda2nc/ioda2nc.cc
@@ -295,12 +295,11 @@ static void process_command_line(int argc, char **argv) {
    else mlog << Debug(1)
              << "Default Config File: " << default_config_file << "\n";
    conf_info.read_config(default_config_file.c_str(), config_file.c_str());
+   ioda_reader.set_data_config(default_config_file.c_str(), config_file.c_str());
 
    // Process the configuration
    conf_info.process_config();
 
-   ioda_reader.set_data_config(default_config_file.c_str(), config_file.c_str());
-
    // Check that valid_end_ut >= valid_beg_ut
    if(valid_beg_ut != (unixtime) 0 && valid_end_ut != (unixtime) 0
       && valid_beg_ut > valid_end_ut) {
@@ -1082,7 +1081,7 @@ static bool get_obs_data_float(NcFile *f_in, const ConcatString &var_name,
    }
    if(status) {
       for(int idx=0; idx<nlocs; idx++)
-         if(ioda_reader.check_missing_thresh(qc_buf[idx])) qc_buf[idx] = bad_data_float;
+         if(ioda_reader.check_missing_thresh(qc_buf[idx])) qc_buf[idx] = bad_data_int;
    }
    else {
       for(int idx=0; idx<nlocs; idx++)