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v0.2 - New SNP methods

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@duceppemo duceppemo released this 21 Mar 01:49
· 1 commit to main since this release
  • Removed kSNP3 as it was creating too much conflicts for the conda environment creation. Please use v0.1 if you want to be able to produce a pan-SNP tree. Consequently, only core-SNP methods remain.
  • Addition of snippy v4.6.0 as alternative method to find SNPs. Now default method. Use FastTree to make tree.
  • Addition of phame v1.0.3 as alternative method to find SNPs. Seems to have lower resolution than snippy. Use FastTree to make tree.
  • README.md updated accordingly.