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Removed kSNP3 as it was creating too much conflicts for the conda environment creation. Please use v0.1 if you want to be able to produce a pan-SNP tree. Consequently, only core-SNP methods remain.
Addition of snippy v4.6.0 as alternative method to find SNPs. Now default method. Use FastTree to make tree.
Addition of phame v1.0.3 as alternative method to find SNPs. Seems to have lower resolution than snippy. Use FastTree to make tree.