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Removed \n inside cells
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Left \r\n for end of rows
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@matuskalas
matuskalas committed Oct 18, 2018
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Showing 1 changed file with 3 additions and 14 deletions.
17 changes: 3 additions & 14 deletions releases/EDAM-bioimaging_alpha04.tsv
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Expand Up @@ -68,11 +68,7 @@ http://edamontology.org/operation____Model-based_segmentation Model-based segmen
http://edamontology.org/operation____Region_growing Region growing Region-based segmentation Needs a comment about the relation between the Watershed and Region growing. FALSE http://edamontology.org/operation_Image_segmentation operation____Region_growing Region-based segmentation bioimaging|Operations|edam
http://edamontology.org/operation____Slice_rendering Slice rendering Cut plane rendering|Slice viewing FALSE http://edamontology.org/operation_Image_visualisation operation____Slice_rendering Cut plane rendering|Slice viewing
http://edamontology.org/operation____Surface_rendering Surface rendering FALSE http://edamontology.org/operation_Image_visualisation operation____Surface_rendering
http://edamontology.org/operation____Top-hat_transform Top-hat transform Hat transform|White top-hat transform|Black top-hat transform|Bottom-hat transform "Relation to Opening and Closing, and differences between top=white and bottom=black

The top-hat transform: the opened image is subtracted from the
original, and desired detail is obtained.
The bottom-hat transform: the residual of a closing compared to the original image." FALSE http://edamontology.org/operation_Morphological_operations operation____Top-hat_transform Hat transform White top-hat transform Black top-hat transform|Bottom-hat transform
http://edamontology.org/operation____Top-hat_transform Top-hat transform Hat transform|White top-hat transform|Black top-hat transform|Bottom-hat transform "Relation to Opening and Closing, and differences between top=white and bottom=black The top-hat transform: the opened image is subtracted from the original, and desired detail is obtained. The bottom-hat transform: the residual of a closing compared to the original image." FALSE http://edamontology.org/operation_Morphological_operations operation____Top-hat_transform Hat transform White top-hat transform Black top-hat transform|Bottom-hat transform
http://edamontology.org/operation___Clustering Clustering FALSE http://edamontology.org/operation_0004 operation___Clustering operations|bioimaging|edam
http://edamontology.org/operation___Colocalisation_analysis Colocalisation analysis Colocalization analysis|Co-localisation analysis FALSE http://edamontology.org/operation_3443 operation___Colocalisation_analysis Colocalization analysis|Co-localisation analysis operations|bioimaging|edam
http://edamontology.org/operation___Image_convolution Image convolution FALSE http://edamontology.org/operation_Image_processing operation___Image_convolution operations|bioimaging|edam
Expand All @@ -98,12 +94,7 @@ http://edamontology.org/operation__RBh3vNecu5XlIPh3kbMM4Cq Drift correction FA
http://edamontology.org/operation__RBNng13hEB0CJD5VzSKqrfB Object detection Particle detection|Isolated object detection FALSE http://edamontology.org/operation_3443 operation__RBNng13hEB0CJD5VzSKqrfB Particle detection|Isolated object detection operations|bioimaging|edam
http://edamontology.org/operation__RBPObKBKIMwjdLygBOlvojW Selective plane illumination microscopy reconstruction FALSE http://edamontology.org/operation_Image_reconstruction operation__RBPObKBKIMwjdLygBOlvojW operations|bioimaging|edam
http://edamontology.org/operation__RBUpi1JSczmHQSf8Q8fDzG5 Collective object tracking Wound healing analysis|Scratch assay analysis FALSE http://edamontology.org/operation_Image_tracking operation__RBUpi1JSczmHQSf8Q8fDzG5 Wound healing analysis|Scratch assay analysis operations|bioimaging|edam
http://edamontology.org/operation__RBYLqCqN4rP7Jy5m5mxpTeM Frequency analysis Fast Fourier transform|FFT|Wavelet transform "https://en.wikipedia.org/wiki/Fourier_analysis
https://en.wikipedia.org/wiki/Wavelet|Frequency domain analysis (or spectral density estimation), is the process of decomposing a complex signal into simpler parts. Many physical processes are best described as a sum of many individual frequency components. Any process that quantifies the various amounts (e.g. amplitudes, powers, intensities, or phases), versus frequency can be called spectrum analysis.

The Fourier transform of a function produces its frequency spectrum by decomposing the function into its sine and cosine components.

Whereas the standard Fourier transform is only localized in frequency, wavelets are localized in both time and frequency. Wavelets are handcrafted to correlate with particular frequencies in a signal; a set of wavelets is usually used for a complete analysis." FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation_2945 operation__RBYLqCqN4rP7Jy5m5mxpTeM Fast Fourier transform|FFT|Wavelet transform operations|bioimaging|edam
http://edamontology.org/operation__RBYLqCqN4rP7Jy5m5mxpTeM Frequency analysis Fast Fourier transform|FFT|Wavelet transform "https://en.wikipedia.org/wiki/Fourier_analysis https://en.wikipedia.org/wiki/Wavelet|Frequency domain analysis (or spectral density estimation), is the process of decomposing a complex signal into simpler parts. Many physical processes are best described as a sum of many individual frequency components. Any process that quantifies the various amounts (e.g. amplitudes, powers, intensities, or phases), versus frequency can be called spectrum analysis. The Fourier transform of a function produces its frequency spectrum by decomposing the function into its sine and cosine components. Whereas the standard Fourier transform is only localized in frequency, wavelets are localized in both time and frequency. Wavelets are handcrafted to correlate with particular frequencies in a signal; a set of wavelets is usually used for a complete analysis." FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation_2945 operation__RBYLqCqN4rP7Jy5m5mxpTeM Fast Fourier transform|FFT|Wavelet transform operations|bioimaging|edam
http://edamontology.org/operation__RCi5QWhY2hXnO46smg6bHRQ Detector gain correction multiplicative FALSE http://edamontology.org/operation__R7MFwdgojfmkZ07yWbdcda0 operation__RCi5QWhY2hXnO46smg6bHRQ operations|bioimaging|edam
http://edamontology.org/operation__RCPVGO34XrwrJasQ5yWBg9k Deformable registration Elastic registration FALSE http://edamontology.org/operation_Image_registration operation__RCPVGO34XrwrJasQ5yWBg9k Elastic registration operations|bioimaging|edam
http://edamontology.org/operation__RDetoixS3xEu0agR2CebaoB Pattern recognition FALSE http://edamontology.org/operation_2423 operation__RDetoixS3xEu0agR2CebaoB operations|bioimaging|edam
Expand Down Expand Up @@ -151,9 +142,7 @@ http://edamontology.org/operation_Image_deconvolution Image deconvolution FALS
http://edamontology.org/operation_Image_enhancement Image enhancement Image restoration "Image enhancement is a term used to refer to an operation that increases the quality of the image, being historically more used in the context of contrast enhancement (which improves visualization for the human eye). However, image enhancement is also a very general term that refers to operations that enhance features interest in the image. An image enhancement operation moves further away from the ""reality"", as opposed to Image reconstruction that moves closer to the ""reality""." FALSE http://edamontology.org/operation_Image_processing operation_Image_enhancement Image restoration operations|bioimaging|edam
http://edamontology.org/operation_Image_processing Image processing Image pre-processing|Image filtering|Image preprocessing|Image postprocessing|Image post-processing|Image manipulation FALSE http://edamontology.org/operation_0004 operation_Image_processing Image pre-processing|Image filtering|Image preprocessing|Image postprocessing|Image post-processing Image manipulation operations|bioimaging|edam
http://edamontology.org/operation_Image_reconstruction Image reconstruction Image restoration "Image enhancement moves further away from the ""reality"", as opposed to Image reconstruction that moves closer to the ""reality""." FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation__RDFFD5jBfUw74a3vJeBAGB1 operation_Image_reconstruction Image restoration operations|bioimaging|edam
http://edamontology.org/operation_Image_registration Image registration Image alignment "Image registration is the process of transforming different sets of data into one coordinate system. Registration is necessary in order to be able to compare or integrate the data obtained from different sensors/imaging modalities, at different times, from different view points, etc. .

Registration can be based on correspondence established between the landmarks or feature points. Alternatively, some similarity/distance metric is established between the image intensity maps to navigate the registration process." FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation_2928 operation_Image_registration Image alignment operations|bioimaging|edam
http://edamontology.org/operation_Image_registration Image registration Image alignment "Image registration is the process of transforming different sets of data into one coordinate system. Registration is necessary in order to be able to compare or integrate the data obtained from different sensors/imaging modalities, at different times, from different view points, etc. . Registration can be based on correspondence established between the landmarks or feature points. Alternatively, some similarity/distance metric is established between the image intensity maps to navigate the registration process." FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation_2928 operation_Image_registration Image alignment operations|bioimaging|edam
http://edamontology.org/operation_Image_segmentation Image segmentation Image segmentation is (one of) the (few) concept(s) on the border between Image (pre)processing (Image->Image) and Image analysis (Image->Data). FALSE http://edamontology.org/operation_Image_processing|http://edamontology.org/operation_3443 operation_Image_segmentation operations|bioimaging|edam
http://edamontology.org/operation_Image_smoothing Smoothing Gaussian filtering|Gaussian blurring|Gaussian smoothing|Blurring FALSE http://edamontology.org/operation_Image_enhancement operation_Image_smoothing Gaussian filtering|Gaussian blurring|Gaussian smoothing Blurring operations|bioimaging|edam
http://edamontology.org/operation_Image_stitching Image stitching FALSE http://edamontology.org/operation_Image_reconstruction operation_Image_stitching operations|bioimaging|edam
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