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demo.html
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demo.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en" >
<head>
<title>EDAM ontology browser</title>
<link rel="icon" type="image/png" href="favicon.ico" />
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-115521967-1"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'UA-115521967-1');
</script>
<script
src="https://code.jquery.com/jquery-3.2.1.min.js"
integrity="sha256-hwg4gsxgFZhOsEEamdOYGBf13FyQuiTwlAQgxVSNgt4="
crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://code.jquery.com/ui/1.12.1/themes/smoothness/jquery-ui.css"/>
<script
src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js"
integrity="sha256-VazP97ZCwtekAsvgPBSUwPFKdrwD3unUfSGVYrahUqU="
crossorigin="anonymous"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"
integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa"
crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css"
integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/4.13.0/d3.min.js"
integrity="sha256-hYXbQJK4qdJiAeDVjjQ9G0D6A0xLnDQ4eJI9dkm7Fpk=" crossorigin="anonymous"></script>
<script src="js/tree-reusable-d3.js"></script>
<script type="text/javascript">
var my_tree;
function demo(){
delay=0;
step=2500;
delay+=step;
setTimeout(function() {
my_tree.cmd.selectElement("http://edamontology.org/topic_3174",true);
$("#simple-pre").append($('<p>Add Metagenomics:</p><pre>my_tree.cmd.selectElement("http://edamontology.org/topic_3174",true);</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.selectElement("http://edamontology.org/topic_0091",false);
$("#simple-pre").append($('<p>Remove Bioinformatics:</p><pre>my_tree.cmd.selectElement("http://edamontology.org/topic_0091",false);</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.expandElement("http://edamontology.org/topic_3065");
$("#simple-pre").append($('<p>Expand to Embriology:</p><pre>my_tree.cmd.expandElement("http://edamontology.org/topic_3065");</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.selectElement("http://edamontology.org/topic_3174",false);
$("#simple-pre").append($('<p>Remove Metagenomics:</p><pre>my_tree.cmd.selectElement("http://edamontology.org/topic_3174",false);</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.selectElement("http://edamontology.org/topic_3401",true);
$("#simple-pre").append($('<p>Add Pain medecine:</p><pre>my_tree.cmd.selectElement("http://edamontology.org/topic_3401",true);</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.collapseNotSelectedElement();
$("#simple-pre").append($('<p>Collapse not selected node:</p><pre>my_tree.cmd.collapseNotSelectedElement();</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
setTimeout(function() {
my_tree.cmd.collapseElement("http://edamontology.org/topic_3303");
$("#simple-pre").append($('<p>Collapse Medecine:</p><pre>my_tree.cmd.collapseElement("http://edamontology.org/topic_3303");</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.selectElement("http://edamontology.org/topic_3065",true,false);
$("#simple-pre").append($('<p>Add Embriology without expanding to it:</p><pre>my_tree.cmd.selectElement("http://edamontology.org/topic_3065",true,false);</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
setTimeout(function() {
my_tree.cmd.expandSelectedElement();
$("#simple-pre").append($('<p>Expand to selected elements:</p><pre>my_tree.cmd.expandSelectedElement();</pre>'));
$('#simple-pre').stop().animate({scrollTop: $('#simple-pre')[0].scrollHeight}, 800);
;}, delay);
delay+=step;
}
window.onload = function() {
my_tree = interactive_tree()
.identifierAccessor(function(d){return d.data.data.uri;})
.debug(true)
.duration(1000)
.tooltipEnabled(true)
.initiallySelectedElementHandler(function(d){return d.data.data.uri==="http://edamontology.org/topic_0091"})
.openElementHandler(function(d){alert(d.data.data.uri);})
.loadingDoneHandler(demo)
;
d3.select("#tree").call(my_tree); // draw chart in div
my_tree.data_url("media/edam_extended.biotools.min.json");
$("#simple-pre").append($(`<p>Starting from this minimal working example: </p><pre>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
<head>
<script src="https://code.jquery.com/jquery-3.2.1.min.js"></script>
<script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/4.13.0/d3.min.js"></script>
<script src="js/tree-reusable-d3.js"></script>
<link rel="stylesheet" href="https://code.jquery.com/ui/1.12.1/themes/smoothness/jquery-ui.css"/>
<link href="css/tree-reusable-d3.css" rel="stylesheet">
<script type="text/javascript">
var my_tree;
window.onload = function() {
my_tree = interactive_tree()
//overriding as the identifier by default consider d.data.id
.identifierAccessor(function(d){return d.data.data.uri;})
.debug(true)
.duration(1000)
.tooltipEnabled(true)
//at first Bioinformatics should be selected
.initiallySelectedElementHandler(function(d){
return d.data.data.uri==="http://edamontology.org/topic_0091"
})
//Show a JS alert when you ctrl-click on a node
.openElementHandler(function(d){
alert("Ctrl-clicked (Open action) on "+d.data.data.uri);
})
;
// pre-draw/build chart in div
d3.select("#tree").call(my_tree);
//indicated where the data can be found
my_tree.data_url("media/edam_extended.biotools.min.json");
}
</script>
</head>
<body>
<div id="tree" style="height:99vh"></div>
</body></pre>`));
}
</script>
<link href="css/tree-reusable-d3.css" rel="stylesheet">
</head>
<body>
<div class="container-fluid">
<div class="row"></div>
<div class="col-xs-12 col-md-6 col-lg-7 col-xl-8">
<div id="tree" style="height:99vh"></div>
</div>
<div class="col-xs-12 col-md-6 col-lg-5 col-xl-4">
<div class="bs-example" style="height:99vh;overflow:auto" id="simple-pre">
</div>
</div>
</div>
</body>