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ehdn-paper-analysis

This is the analysis for the paper: ExpansionHunter Denovo ______

Subsections

Polaris Analysis

This directory contains scripts to generate pbs scripts to realign Polaris cohorts and run RE methods to compare results.

Compare STR Databases

This directory contains the comparison between STR catalogues using Intervene.

Simulation of STRs

This directory contains the scripts for simulating STRs, and calling them from simulated BAM files.