diff --git a/deploy/helm/elastic-agent/README.md b/deploy/helm/elastic-agent/README.md
index 9afcf8625e1..5c7db4b4bfb 100644
--- a/deploy/helm/elastic-agent/README.md
+++ b/deploy/helm/elastic-agent/README.md
@@ -62,7 +62,7 @@ The chart built-in [kubernetes integration](https://docs.elastic.co/integrations
 
 | Key | Type | Default | Description |
 |-----|------|---------|-------------|
-| kubernetes.enabled | bool | `false` | enable Kubernetes integration. |
+| kubernetes.enabled | bool | `true` | enable Kubernetes integration. |
 | kubernetes.output | string | `"default"` | name of the output used in kubernetes integration. Note that this output needs to be defined in [outputs](#1-outputs) |
 | kubernetes.namespace | string | `"default"` | kubernetes namespace |
 | kubernetes.hints.enabled | bool | `false` | enable [elastic-agent autodiscovery](https://www.elastic.co/guide/en/fleet/current/elastic-agent-kubernetes-autodiscovery.html) feature |
diff --git a/deploy/helm/elastic-agent/examples/eck/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/eck/rendered/manifest.yaml
index 5fc6c5f1c6d..e43edf229ec 100644
--- a/deploy/helm/elastic-agent/examples/eck/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/eck/rendered/manifest.yaml
@@ -1141,6 +1141,7 @@ spec:
             name: var-lib
             readOnly: true
         dnsPolicy: ClusterFirstWithHostNet
+        hostNetwork: true
         nodeSelector:
           kubernetes.io/os: linux
         serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/fleet-managed/README.md b/deploy/helm/elastic-agent/examples/fleet-managed/README.md
index abcc0f12f86..316746a70fa 100644
--- a/deploy/helm/elastic-agent/examples/fleet-managed/README.md
+++ b/deploy/helm/elastic-agent/examples/fleet-managed/README.md
@@ -31,38 +31,5 @@ agent:
     enabled: true
     url: $FLEET_URL # replace with Fleet URL
     token: $FLEET_TOKEN # replace with Fleet Enrollment token
-    preset: nginx
-  presets:
-    nginx:
-      mode: deployment
-      securityContext:
-        runAsUser: 0
-      rules:
-        # minimum cluster role ruleset required by agent
-        - apiGroups: [ "" ]
-          resources:
-            - nodes
-            - namespaces
-            - pods
-          verbs:
-            - get
-            - watch
-            - list
-        - apiGroups: [ "apps" ]
-          resources:
-            - replicasets
-          verbs:
-            - get
-            - list
-            - watch
-        - apiGroups: [ "batch" ]
-          resources:
-            - jobs
-          verbs:
-            - get
-            - list
-            - watch
-      providers:
-        kubernetes_leaderelection:
-          enabled: false
+    preset: perNode
 ```
diff --git a/deploy/helm/elastic-agent/examples/fleet-managed/fleet-values.yaml b/deploy/helm/elastic-agent/examples/fleet-managed/fleet-values.yaml
index 4a89c783f4b..7492c20123b 100644
--- a/deploy/helm/elastic-agent/examples/fleet-managed/fleet-values.yaml
+++ b/deploy/helm/elastic-agent/examples/fleet-managed/fleet-values.yaml
@@ -1,43 +1,10 @@
+kubernetes:
+  enabled: true
+system:
+  enabled: true
 agent:
   fleet:
     enabled: true
     url: http://localhost:8220
     token: fleetToken
-    preset: nginx
-  presets:
-    nginx:
-      mode: deployment
-      securityContext:
-        runAsUser: 0
-      serviceAccount:
-        create: true
-      clusterRole:
-        create: true
-        rules:
-          # minimum cluster role ruleset required by agent
-          - apiGroups: [ "" ]
-            resources:
-              - nodes
-              - namespaces
-              - pods
-            verbs:
-              - get
-              - watch
-              - list
-          - apiGroups: [ "apps" ]
-            resources:
-              - replicasets
-            verbs:
-              - get
-              - list
-              - watch
-          - apiGroups: [ "batch" ]
-            resources:
-              - jobs
-            verbs:
-              - get
-              - list
-              - watch
-      providers:
-        kubernetes_leaderelection:
-          enabled: false
+    preset: perNode
diff --git a/deploy/helm/elastic-agent/examples/fleet-managed/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/fleet-managed/rendered/manifest.yaml
index 981128216cd..7fe9b220712 100644
--- a/deploy/helm/elastic-agent/examples/fleet-managed/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/fleet-managed/rendered/manifest.yaml
@@ -3,7 +3,7 @@
 apiVersion: v1
 kind: ServiceAccount
 metadata:
-  name: agent-nginx-example
+  name: agent-pernode-example
   namespace: "default"
   labels:
     helm.sh/chart: elastic-agent-9.0.0-beta
@@ -15,7 +15,7 @@ metadata:
 apiVersion: v1
 kind: Secret
 metadata:
-  name: agent-nginx-example
+  name: agent-pernode-example
   namespace: "default"
   labels:
     helm.sh/chart: elastic-agent-9.0.0-beta
@@ -28,15 +28,18 @@ stringData:
     fleet:
       enabled: true
     providers:
+      kubernetes:
+        node: ${NODE_NAME}
+        scope: node
       kubernetes_leaderelection:
-        enabled: false
-        leader_lease: example-nginx
+        enabled: true
+        leader_lease: example-pernode
 ---
 # Source: elastic-agent/templates/agent/cluster-role.yaml
 apiVersion: rbac.authorization.k8s.io/v1
 kind: ClusterRole
 metadata:
-  name: agent-nginx-example-default
+  name: agent-perNode-example-default
   labels:
     helm.sh/chart: elastic-agent-9.0.0-beta
     app.kubernetes.io/name: elastic-agent
@@ -111,38 +114,12 @@ rules:
       - get
       - list
       - watch
-  - apiGroups:
-    - ""
-    resources:
-    - nodes
-    - namespaces
-    - pods
-    verbs:
-    - get
-    - watch
-    - list
-  - apiGroups:
-    - apps
-    resources:
-    - replicasets
-    verbs:
-    - get
-    - list
-    - watch
-  - apiGroups:
-    - batch
-    resources:
-    - jobs
-    verbs:
-    - get
-    - list
-    - watch
 ---
 # Source: elastic-agent/templates/agent/cluster-role-binding.yaml
 apiVersion: rbac.authorization.k8s.io/v1
 kind: ClusterRoleBinding
 metadata:
-  name: agent-nginx-example-default
+  name: agent-perNode-example-default
   labels:
     helm.sh/chart: elastic-agent-9.0.0-beta
     app.kubernetes.io/name: elastic-agent
@@ -150,18 +127,18 @@ metadata:
     app.kubernetes.io/version: 9.0.0
 subjects:
   - kind: ServiceAccount
-    name: agent-nginx-example
+    name: agent-pernode-example
     namespace: "default"
 roleRef:
   kind: ClusterRole
-  name: agent-nginx-example-default
+  name: agent-perNode-example-default
   apiGroup: rbac.authorization.k8s.io
 ---
-# Source: elastic-agent/templates/agent/k8s/deployment.yaml
+# Source: elastic-agent/templates/agent/k8s/daemonset.yaml
 apiVersion: apps/v1
-kind: Deployment
+kind: DaemonSet
 metadata:
-  name: agent-nginx-example
+  name: agent-pernode-example
   namespace: "default"
   labels:
     helm.sh/chart: elastic-agent-9.0.0-beta
@@ -171,13 +148,13 @@ metadata:
 spec:
   selector:
     matchLabels:
-      name: agent-nginx-example
+      name: agent-pernode-example
   template:
     metadata:
       labels:
-        name: agent-nginx-example
+        name: agent-pernode-example
       annotations:
-        checksum/config: 975ed05540e0d099fe1b28b15d6403aacee676d0776a69fb75eb8624e19ad2de
+        checksum/config: cd7c5c4f03cc8377d18ee22cf236428090959fc194ee647bd97a39b79f38c807
     spec:
       automountServiceAccountToken: true
       containers:
@@ -196,6 +173,8 @@ spec:
               fieldPath: metadata.name
         - name: STATE_PATH
           value: /usr/share/elastic-agent/state
+        - name: ELASTIC_NETINFO
+          value: "false"
         - name: FLEET_URL
           value: http://localhost:8220
         - name: FLEET_ENROLLMENT_TOKEN
@@ -207,9 +186,33 @@ spec:
         image: docker.elastic.co/beats/elastic-agent:9.0.0-SNAPSHOT
         imagePullPolicy: IfNotPresent
         name: agent
+        resources:
+          limits:
+            memory: 1000Mi
+          requests:
+            cpu: 100m
+            memory: 400Mi
         securityContext:
           runAsUser: 0
         volumeMounts:
+        - mountPath: /hostfs/proc
+          name: proc
+          readOnly: true
+        - mountPath: /hostfs/sys/fs/cgroup
+          name: cgroup
+          readOnly: true
+        - mountPath: /var/lib/docker/containers
+          name: varlibdockercontainers
+          readOnly: true
+        - mountPath: /var/log
+          name: varlog
+          readOnly: true
+        - mountPath: /hostfs/etc
+          name: etc-full
+          readOnly: true
+        - mountPath: /hostfs/var/lib
+          name: var-lib
+          readOnly: true
         - mountPath: /usr/share/elastic-agent/state
           name: agent-data
         - mountPath: /etc/elastic-agent/agent.yml
@@ -217,13 +220,34 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
-      serviceAccountName: agent-nginx-example
+      hostNetwork: true
+      nodeSelector:
+        kubernetes.io/os: linux
+      serviceAccountName: agent-pernode-example
       volumes:
       - hostPath:
-          path: /etc/elastic-agent/default/agent-nginx-example-managed/state
+          path: /proc
+        name: proc
+      - hostPath:
+          path: /sys/fs/cgroup
+        name: cgroup
+      - hostPath:
+          path: /var/lib/docker/containers
+        name: varlibdockercontainers
+      - hostPath:
+          path: /var/log
+        name: varlog
+      - hostPath:
+          path: /etc
+        name: etc-full
+      - hostPath:
+          path: /var/lib
+        name: var-lib
+      - hostPath:
+          path: /etc/elastic-agent/default/agent-pernode-example-managed/state
           type: DirectoryOrCreate
         name: agent-data
       - name: config
         secret:
           defaultMode: 292
-          secretName: agent-nginx-example
+          secretName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/kubernetes-default/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/kubernetes-default/rendered/manifest.yaml
index 918d3797f46..b53fe7e5f9a 100644
--- a/deploy/helm/elastic-agent/examples/kubernetes-default/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/kubernetes-default/rendered/manifest.yaml
@@ -1147,6 +1147,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/kubernetes-hints-autodiscover/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/kubernetes-hints-autodiscover/rendered/manifest.yaml
index 65f66cc1d6b..e9b272adf20 100644
--- a/deploy/helm/elastic-agent/examples/kubernetes-hints-autodiscover/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/kubernetes-hints-autodiscover/rendered/manifest.yaml
@@ -1149,6 +1149,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/kubernetes-only-logs/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/kubernetes-only-logs/rendered/manifest.yaml
index f1d17f4c929..03621779427 100644
--- a/deploy/helm/elastic-agent/examples/kubernetes-only-logs/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/kubernetes-only-logs/rendered/manifest.yaml
@@ -291,6 +291,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/multiple-integrations/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/multiple-integrations/rendered/manifest.yaml
index cc3c2742a2c..5529f8f49db 100644
--- a/deploy/helm/elastic-agent/examples/multiple-integrations/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/multiple-integrations/rendered/manifest.yaml
@@ -1165,6 +1165,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/system-custom-auth-paths/agent-system-values.yaml b/deploy/helm/elastic-agent/examples/system-custom-auth-paths/agent-system-values.yaml
index 52615a36cb5..008661c689f 100644
--- a/deploy/helm/elastic-agent/examples/system-custom-auth-paths/agent-system-values.yaml
+++ b/deploy/helm/elastic-agent/examples/system-custom-auth-paths/agent-system-values.yaml
@@ -8,6 +8,7 @@ system:
     vars:
       paths:
         - /var/log/custom_syslog.log
-
+kubernetes:
+  enabled: false
 agent:
   unprivileged: true
diff --git a/deploy/helm/elastic-agent/examples/system-custom-auth-paths/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/system-custom-auth-paths/rendered/manifest.yaml
index cc8f9281ec1..e8586bbccde 100644
--- a/deploy/helm/elastic-agent/examples/system-custom-auth-paths/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/system-custom-auth-paths/rendered/manifest.yaml
@@ -363,6 +363,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: agent-pernode-example
diff --git a/deploy/helm/elastic-agent/examples/user-service-account/rendered/manifest.yaml b/deploy/helm/elastic-agent/examples/user-service-account/rendered/manifest.yaml
index dc1b3ee246e..9f9493ed80d 100644
--- a/deploy/helm/elastic-agent/examples/user-service-account/rendered/manifest.yaml
+++ b/deploy/helm/elastic-agent/examples/user-service-account/rendered/manifest.yaml
@@ -1117,6 +1117,7 @@ spec:
           readOnly: true
           subPath: agent.yml
       dnsPolicy: ClusterFirstWithHostNet
+      hostNetwork: true
       nodeSelector:
         kubernetes.io/os: linux
       serviceAccountName: user-sa-perNode
diff --git a/deploy/helm/elastic-agent/templates/agent/_helpers.tpl b/deploy/helm/elastic-agent/templates/agent/_helpers.tpl
index 01f246ff0b2..9832dea7b25 100644
--- a/deploy/helm/elastic-agent/templates/agent/_helpers.tpl
+++ b/deploy/helm/elastic-agent/templates/agent/_helpers.tpl
@@ -30,8 +30,8 @@ Entrypoint for chart initialisation
 {{- if not (hasKey $.Values.agent "initialised") -}}
 {{/* init order matters */}}
 {{- include (printf "elasticagent.engine.%s.init" $.Values.agent.engine) $ -}}
-{{- include "elasticagent.init.fleet" $ -}}
 {{- include "elasticagent.init.inputs" $ -}}
+{{- include "elasticagent.init.fleet" $ -}}
 {{- include "elasticagent.init.presets" $ -}}
 {{- $_ := set $.Values.agent "initialised" dict -}}
 {{- end -}}
@@ -62,10 +62,12 @@ Initialise input templates if we are not deploying as managed
 */}}
 {{- define "elasticagent.init.inputs" -}}
 {{- $ := . -}}
-{{- if eq $.Values.agent.fleet.enabled false -}}
-{{/* standalone agent so initialise inputs */}}
+{{/* initialise inputs of the built-in integrations, even if fleet is enabled,
+ as they change the k8s configuration of presets e.g. necessary volume mounts, etc. */}}
 {{- include "elasticagent.kubernetes.init" $ -}}
 {{- include "elasticagent.system.init" $ -}}
+{{/* initialise inputs the custom integrations only if fleet is disabled */}}
+{{- if eq $.Values.agent.fleet.enabled false -}}
 {{- range $customInputName, $customInputVal := $.Values.extraIntegrations -}}
 {{- $customInputPresetName := ($customInputVal).preset -}}
 {{- $presetVal := get $.Values.agent.presets $customInputPresetName -}}
@@ -97,7 +99,6 @@ Validate and initialise the defined agent presets
 {{- end -}}
 {{- end -}}
 {{- end -}}
-{{/* by default we disable leader election but we also set the name of the leader lease in case it is explicitly enabled */}}
 {{- if empty ($presetVal).providers -}}
 {{- $_ := set $presetVal "providers" dict -}}
 {{- end -}}
@@ -106,7 +107,13 @@ Validate and initialise the defined agent presets
 {{- $_ := set $presetProviders "kubernetes_leaderelection" dict -}}
 {{- end -}}
 {{- $presetLeaderLeaseName := (printf "%s-%s" $.Release.Name $presetName) | lower  -}}
+{{/* by default we disable leader election but we also set the name of the leader lease in case it is explicitly enabled */}}
 {{- $defaultLeaderElection := dict "enabled" false "leader_lease" $presetLeaderLeaseName -}}
+{{- if eq $.Values.agent.fleet.enabled true -}}
+{{/* for fleet mode the leader election is enabled by default */}}
+{{- $_ := set $defaultLeaderElection "enabled" true -}}
+{{- end -}}
+{{/* merge the default leader election with the leader election from the preset giving priority to the one from the preset */}}
 {{- $presetLeaderElection := mergeOverwrite dict $defaultLeaderElection ($presetProviders).kubernetes_leaderelection -}}
 {{- $_ := set $presetProviders "kubernetes_leaderelection" $presetLeaderElection -}}
 {{- end -}}
diff --git a/deploy/helm/elastic-agent/templates/integrations/_kubernetes/_preset_pernode.tpl b/deploy/helm/elastic-agent/templates/integrations/_kubernetes/_preset_pernode.tpl
index 396dd117238..3feb3f9f60d 100644
--- a/deploy/helm/elastic-agent/templates/integrations/_kubernetes/_preset_pernode.tpl
+++ b/deploy/helm/elastic-agent/templates/integrations/_kubernetes/_preset_pernode.tpl
@@ -2,7 +2,7 @@
 {{- include "elasticagent.preset.mutate.volumemounts" (list $ $.Values.agent.presets.perNode "elasticagent.kubernetes.pernode.preset.volumemounts") -}}
 {{- include "elasticagent.preset.mutate.volumes" (list $ $.Values.agent.presets.perNode "elasticagent.kubernetes.pernode.preset.volumes") -}}
 {{- include "elasticagent.preset.mutate.outputs.byname" (list $ $.Values.agent.presets.perNode $.Values.kubernetes.output)}}
-{{- if eq $.Values.kubernetes.hints.enabled true -}}
+{{- if and (eq $.Values.kubernetes.hints.enabled true) (eq $.Values.agent.fleet.enabled false) -}}
 {{- include "elasticagent.preset.mutate.providers.kubernetes.hints" (list $ $.Values.agent.presets.perNode "elasticagent.kubernetes.pernode.preset.providers.kubernetes.hints") -}}
 {{- end -}}
 {{- if or (eq $.Values.kubernetes.scheduler.enabled true) (eq $.Values.kubernetes.controller_manager.enabled true) -}}
diff --git a/deploy/helm/elastic-agent/values.yaml b/deploy/helm/elastic-agent/values.yaml
index 93d8bb71f4c..4306ee007a2 100644
--- a/deploy/helm/elastic-agent/values.yaml
+++ b/deploy/helm/elastic-agent/values.yaml
@@ -47,7 +47,7 @@ kubernetes:
   # -- enable Kubernetes integration.
   # @section -- 2 - Kubernetes integration
   # @sectionDescriptionTemplate -- Kubernetes
-  enabled: false
+  enabled: true
   # -- name of the output used in kubernetes integration. Note that this output needs to be defined in
   # [outputs](#1-outputs)
   # @section -- 2 - Kubernetes integration
@@ -333,7 +333,7 @@ agent:
     pullPolicy: IfNotPresent
     tag: "9.0.0-SNAPSHOT"
   # -- image pull secrets
-  # @section -- 3 - Elastic-Agent Configuration
+  # @section -- 6 - Elastic-Agent Configuration
   imagePullSecrets: []
   # -- generate kubernetes manifests or [ECK](https://github.com/elastic/cloud-on-k8s) CRDs
   # @section -- 6 - Elastic-Agent Configuration
@@ -438,6 +438,7 @@ agent:
         create: true
       clusterRole:
         create: true
+      hostNetwork: true
       resources:
         limits:
           memory: 1000Mi