_quarto.yml

project:
  type: website
  execute-dir: project
  render:
    - "*.qmd"
    - "!CONTRIBUTIONG.md"
    - "!LICENSE.md"
    - "!day_3/practical_5/**"

website:
  title: "Spatial Omics Data Analysis"
  favicon: assets/elixir_favicon.ico
  search: true
  page-navigation: true
  navbar:
    # background: "#0c3450ff"
    left:
      - href: index.qmd
        text: Home
      - href: schedule.qmd
        text: Schedule
      - href: practicals.qmd
        text: Practicals
      - href: presentations.qmd
        text: Presentations
      # - text: "practicals"
      #   menu:
      #     - href: day_1/practical_1/workdir/imaging_based_data_analysis.ipynb
      #       text: "Practical 1:  Imaging-based data analysis"
      #     - href: day_2/practical_3/workdir/practical_3.ipynb
      #       text: "Practical 3: Integration with scRNA-seq"
    right:
      - icon: github
        href: https://github.com/elixir-europe-training/ELIXIR-SCO-spatial-omics/
        aria-label: GitHub
  sidebar:
    logo: assets/ELIXIR1.png

format:
  html:
    code-link: true
    theme: 
      - default
      - custom.scss
    toc: true

execute:
  freeze: auto 
  cache: true
  tidy: true