NAMESPACE

# Generated by roxygen2: do not edit by hand

export(RLE)
export(aggregate_fCounts_res)
export(aggregate_salmon_quant)
export(count_assigned_summary)
export(differential_expression)
export(filter_counts)
export(normalize_counts)
export(read_star_final_log)
import(DESeq2)
import(edgeR)
import(grDevices)
import(openxlsx)
import(pals)
import(pcaMethods)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,estimateDispersions)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,vst)
importFrom(SummarizedExperiment,assay)
importFrom(edgeR,voomLmFit)
importFrom(grDevices,png)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,plotMDS)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(pals,brewer.set1)
importFrom(plotrix,thigmophobe.labels)
importFrom(stats,density)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,combn)
importFrom(utils,read.delim)
importFrom(utils,write.table)
importFrom(vsn,meanSdPlot)