diff --git a/cleedpy/cleed/original_test_cleed.c b/cleedpy/cleed/original_test_cleed.c new file mode 100644 index 0000000..ee0f6ad --- /dev/null +++ b/cleedpy/cleed/original_test_cleed.c @@ -0,0 +1,573 @@ +/********************************************************************* +GH/05.10.00 + file contains functions: + + main + Main program for LEED calculations (only for bravaislayer) + +Changes: + +GH/05.10.00 - early return option (-e). + + +*********************************************************************/ + +#include +#include + +#include "gh_stddef.h" +#include "leed.h" + + + +/* +#define CONTROL_X +*/ +#define CONTROL_FLOW + + +#define CONTROL_IO +#define CONTROL +#define WARNING +#define ERROR + +#define CTR_NORMAL 998 +#define CTR_EARLY_RETURN 999 + +/*======================================================================*/ + +main(int argc, char *argv[]) + +/********************************************************************* + Perform a LEED calculation for anisotropic vibrations a general case + + INPUT: + + DESIGN: + +*********************************************************************/ +{ +struct cryst_str *bulk; +struct cryst_str *over; +struct phs_str *phs_shifts; +struct beam_str *beams_all; +struct beam_str *beams_out; +struct beam_str *beams_now; +struct beam_str *beams_set; +struct var_str *v_par; +struct eng_str *eng; + +mat Tpp, Tmm, Rpm, Rmp; +mat Tpp_s, Tmm_s, Rpm_s, Rmp_s; +mat R_bulk, R_tot; +mat Amp; + +int ctr_flag; +int i_c, i_arg; +int n_beams_now, n_beams_set; +int i_set, n_set, offset; +int i_layer; + +real energy; +real vec[4]; + +char linebuffer[STRSZ]; + +char bul_file[STRSZ]; /* input/output files */ +char par_file[STRSZ]; +char pro_name[STRSZ]; +char res_file[STRSZ]; + +FILE *pro_stream; +FILE *res_stream; + + Tpp = Tmm = Rpm = Rmp = NULL; + Tpp_s = Tmm_s = Rpm_s = Rmp_s = NULL; + R_bulk = R_tot = NULL; + Amp = NULL; + + bulk = over = NULL; + phs_shifts = NULL; + beams_all = NULL; + beams_now = NULL; + beams_set = NULL; + beams_out = NULL; + v_par = NULL; + eng = NULL; + + +/********************************************************************* + Preset parameters (file names) set by arguments +*********************************************************************/ + + ctr_flag = CTR_NORMAL; + + strncpy(bul_file,"---", STRSZ); + + strncpy(par_file,"---", STRSZ); + strncpy(res_file,"leed.res", STRSZ); + strncpy(pro_name,"leed.pro", STRSZ); + +/********************************************************************* + Decode arguments: + + -b - (optional input file) bulk and non-geometrical + parameters. + -i - (mandatory input file) overlayer parameters of all + parameters (if bul_file does not exist). + -o - (output file) IV output. +*********************************************************************/ + + for (i_arg = 1; i_arg < argc; i_arg++) + { + if(*argv[i_arg] != '-') + { +#ifdef ERROR + fprintf(STDERR,"*** error (LEED_TEMP):\tsyntax error:\n"); + fprintf(STDERR,"\tusage: \tleed -i -o "); + fprintf(STDERR," [-b -e]\n"); +#endif + exit(1); + } + else + { + +/* Read parameter input file */ + if(strncmp(argv[i_arg], "-b", 2) == 0) + { + i_arg++; + strncpy(bul_file, argv[i_arg], STRSZ); + } /* -b */ + +/* Read parameter input file */ + if(strncmp(argv[i_arg], "-i", 2) == 0) + { + i_arg++; + strncpy(par_file, argv[i_arg], STRSZ); + } /* -i */ + +/* Read and open results file */ + if(strncmp(argv[i_arg], "-o", 2) == 0) + { + i_arg++; + strncpy(res_file, argv[i_arg], STRSZ); + if ((res_stream = fopen(res_file,"w")) == NULL) + { +#ifdef ERROR + fprintf(STDERR, + "*** error (LEED_TEMP): could not open output file \"%s\"\n", + res_file); +#endif + exit(1); + } + } /* -o */ + +/* Read parameter input file */ + if(strncmp(argv[i_arg], "-e", 2) == 0) + { + ctr_flag = CTR_EARLY_RETURN; + } /* -e */ + + + } /* else */ + } /* for i_arg */ + +/********************************************************************* + Check arguments: + - check existence of par_file. + - if bul_file is not specified, use par_file instead. + - check existence of res_file. +*********************************************************************/ + + if(strncmp(par_file, "---", 3) == 0) + { +#ifdef ERROR + fprintf(STDERR, + "*** error (LEED_TEMP): no parameter input file (option -i) specified\n"); +#endif + exit(1); + } + + if(strncmp(bul_file, "---", 3) == 0) + { + strncpy(bul_file, par_file, STRSZ); + } + + if(strncmp(res_file, "leed.res", 8) == 0) + { +#ifdef WARNING + fprintf(STDWAR, + "* warning (LEED_TEMP): no output file (option -o) specified\n"); + fprintf(STDWAR,"\toutput will be written to file \"%s\"\n", res_file); +#endif + + if ((res_stream = fopen(res_file,"w")) == NULL) + { +#ifdef ERROR + fprintf(STDERR, + "*** error (LEED_TEMP): could not open output file \"%s\"\n", + res_file); +#endif + exit(1); + } + } + +/********************************************************************* + Read input parameters +*********************************************************************/ + + inp_rdbul_nd(&bulk, &phs_shifts, bul_file); + inp_rdpar(&v_par, &eng, bulk, bul_file); + inp_rdovl_nd(&over, &phs_shifts, bulk, par_file); + n_set = bm_gen(&beams_all, bulk, v_par, eng->fin); + + inp_showbop(bulk, over, phs_shifts); + + if( ctr_flag == CTR_EARLY_RETURN ) + { + fprintf(STDCTR, "(LEED_TEMP): EARLY RETURN \n"); + exit(0); + } + + out_head (bulk, res_stream); + out_bmlist(&beams_out, beams_all, eng, res_stream); + +/********************************************************************* + Prepare some often used parameters. +*********************************************************************/ + + mk_cg_coef (2*v_par->l_max); + mk_ylm_coef(2*v_par->l_max); + +#ifdef CONTROL + fprintf(STDCTR, "(LEED_TEMP): E_ini = %.1f, E_fin = %.1f, E_stp %.1f\n", + eng->ini*HART, eng->fin*HART, eng->stp*HART); + + fprintf(STDCTR, "(LEED_TEMP): n_set = %d\n", n_set); +#endif + +/********************************************************************* + Energy Loop +*********************************************************************/ + + for( energy = eng->ini; energy < eng->fin + E_TOLERANCE; energy += eng->stp) + { + pc_update(v_par, phs_shifts, energy); + n_beams_now = bm_select(&beams_now, beams_all, v_par, bulk->dmin); + +#ifdef CONTROL + fprintf(STDCTR, "(LEED_TEMP):\n\t => E = %.1f eV (%d beams used) <=\n\n", + v_par->eng_v*HART, n_beams_now); +#endif + + +/********************************************************************* + BULK: + Loop over beam sets + + Create matrix R_bulk that will eventually contain the bulk + reflection matrix +*********************************************************************/ + R_bulk = matalloc(R_bulk, n_beams_now, n_beams_now, NUM_COMPLEX); + for(offset = 1, i_set = 0; i_set < n_set; i_set ++) + { + n_beams_set = bm_set(&beams_set, beams_now, i_set); + +/********************************************************************* + Loop over periodic bulk layers +*********************************************************************/ + + /********************************************************** + Compute scattering matrices for bottom-most bulk layer: + - single Bravais layer or composite layer + **********************************************************/ + +#ifdef CONTROL_FLOW + fprintf(STDCTR, "(LEED_TEMP periodic): bulk layer %d/%d, set %d/%d\n", + 0, bulk->nlayers - 1, i_set, n_set - 1); +#endif + + if( (bulk->layers + 0)->natoms == 1) + { + ms_bravl_nd( &Tpp, &Tmm, &Rpm, &Rmp, + v_par, (bulk->layers + 0), beams_set); + } + else + { + ms_compl_nd( &Tpp, &Tmm, &Rpm, &Rmp, + v_par, (bulk->layers + 0), beams_set); + } + +#ifdef CONTROL_X + fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Tpp:"); + matshow(Tpp); + fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Tmm:"); + matshow(Tmm); + fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Rpm:"); + matshow(Rpm); + fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Rmp:"); + matshow(Rmp); +#endif + + /********************************************************** + Loop over the other bulk layers + **********************************************************/ + + for(i_layer = 1; + ( (bulk->layers+i_layer)->periodic == 1) && + (i_layer < bulk->nlayers); + i_layer ++) + { +#ifdef CONTROL_FLOW + fprintf(STDCTR, "(LEED_TEMP periodic): bulk layer %d/%d, set %d/%d\n", + i_layer, bulk->nlayers - 1, i_set, n_set - 1); +#endif + + /************************************************************** + Compute scattering matrices R/T_s for a single bulk layer + - single Bravais layer or composite layer + ***************************************************************/ + + if( (bulk->layers + i_layer)->natoms == 1) + { + ms_bravl_nd ( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + else + { + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + + /*************************************************************************** + Add the single layer matrices to the rest by layer doubling + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): + (bulk->layers + i_layer)->vec_from_last + ****************************************************************************/ +#ifdef CONTROL_FLOW + fprintf(STDCTR, + "(LEED_TEMP): before ld_2lay vec_from...(%.2f %.2f %.2f)\n", + (bulk->layers + i_layer)->vec_from_last[1] * BOHR, + (bulk->layers + i_layer)->vec_from_last[2] * BOHR, + (bulk->layers + i_layer)->vec_from_last[3] * BOHR); +#endif + + ld_2lay( &Tpp, &Tmm, &Rpm, &Rmp, + Tpp, Tmm, Rpm, Rmp, + Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_set, (bulk->layers + i_layer)->vec_from_last); + + } /* for i_layer (bulk) */ + + /********************************************************************* + Layer doubling for all periodic bulk layers until convergence is + reached: + - inter layer vector is (bulk->layers + 0)->vec_from_last + **********************************************************************/ +#ifdef CONTROL_FLOW + fprintf(STDCTR, "(LEED_TEMP): before ld_2n vec_from...(%.2f %.2f %.2f)\n", + (bulk->layers + 0)->vec_from_last[1] * BOHR, + (bulk->layers + 0)->vec_from_last[2] * BOHR, + (bulk->layers + 0)->vec_from_last[3] * BOHR); +#endif + + Rpm = ld_2n( Rpm, Tpp, Tmm, Rpm, Rmp, + beams_set, (bulk->layers + 0)->vec_from_last); + + /******************************************************************* + Compute scattering matrices for top-most bulk layer if it is + not periodic. + - single Bravais layer or composite layer + **********************************************************************/ + + if( i_layer == bulk->nlayers - 1 ) + { +#ifdef CONTROL_FLOW + fprintf(STDCTR, + "(LEED_TEMP not periodic): bulk layer %d/%d, set %d/%d\n", + i_layer, bulk->nlayers - 1, i_set, n_set - 1); +#endif + + if( (bulk->layers + i_layer)->natoms == 1) + { + ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + else + { + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + + /************************************************************************** + Add the single layer matrices of the top-most layer to the rest + by layer doubling: + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): + (bulk->layers + i_layer)->vec_from_last + ***************************************************************************/ + + Rpm = ld_2lay_rpm(Rpm, Rpm, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_set, (bulk->layers + i_layer)->vec_from_last); + + } /* if( i_layer == bulk->nlayers - 1 ) */ + + /******************************************************* + Insert reflection matrix for this beam set into R_bulk. + ********************************************************/ + + R_bulk = matins(R_bulk, Rpm, offset, offset); + offset += n_beams_set; + + /************************* + Write cpu time to output + **************************/ + + sprintf(linebuffer,"(LEED_TEMP): bulk layers set %d, E = %.1f", + i_set, energy*HART); + cpu_time(STDCPU,linebuffer); + } /* for i_set */ + +/********************************************************************* + OVERLAYER + Loop over all overlayer layers +*********************************************************************/ + + for(i_layer = 0; i_layer < over->nlayers; i_layer ++) + { +#ifdef CONTROL_FLOW + fprintf(STDCTR, "(LEED_TEMP): overlayer %d/%d\n", i_layer, over->nlayers - 1); +#endif + /*********************************************************** + Calculate scattering matrices for a single overlayer layer + - only single Bravais layer + ************************************************************/ + + if( (over->layers + i_layer)->natoms == 1) + { + ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (over->layers + i_layer), beams_now); + } + else + { + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (over->layers + i_layer), beams_now); + } + +#ifdef CONTROL_X + fprintf(STDCTR, "\n(LEED_TEMP):overlayer %d ...\n",i_layer); + fprintf(STDCTR, "\n(LEED_TEMP): Tpp:\n"); + matshowabs(Tpp_s); + fprintf(STDCTR, "\n(LEED_TEMP): Tmm:\n"); + matshowabs(Tmm_s); + fprintf(STDCTR, "\n(LEED_TEMP): Rpm:\n"); + matshowabs(Rpm_s); + fprintf(STDCTR, "\n(LEED_TEMP): Rmp:\n"); + matshowabs(Rmp_s); +#endif + + /**************************************************************** + Add the single layer matrices to the rest by layer doubling: + - if the current layer is the bottom-most (i_layer == 0), + the inter layer vector is calculated from the vectors between + top-most bulk layer and origin + ( (bulk->layers + nlayers)->vec_to_next ) + and origin and bottom-most overlayer + (over->layers + 0)->vec_from_last. + + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): (over->layers + i_layer)->vec_from_last + **********************************************************************/ + + if (i_layer == 0) + { + for(i_c = 1; i_c <= 3; i_c ++) + { + vec[i_c] = (bulk->layers + bulk->nlayers - 1)->vec_to_next[i_c] + + (over->layers + 0)->vec_from_last[i_c]; + } + +#ifdef CONTROL_FLOW + fprintf(STDCTR, + "(LEED):over0 before ld_2lay_rpm vec..(%.2f %.2f %.2f)\n", + vec[1] * BOHR,vec[2] * BOHR, vec[3] * BOHR); +#endif + + R_tot = ld_2lay_rpm(R_tot, R_bulk, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_now, vec); + } + else + { +#ifdef CONTROL_FLOW + fprintf(STDCTR, + "(LEED):over%d before ld_2lay_rpm vec..(%.2f %.2f %.2f)\n", + i_layer,(over->layers + i_layer)->vec_from_last[1] * BOHR, + (over->layers + i_layer)->vec_from_last[2] * BOHR, + (over->layers + i_layer)->vec_from_last[3] * BOHR); +#endif + + R_tot = ld_2lay_rpm(R_tot, R_tot, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_now, (over->layers + i_layer)->vec_from_last); + } + + /************************** + Write cpu time to output + **************************/ + + sprintf(linebuffer,"(LEED): overlayer %d, E = %.1f", + i_layer, energy * HART); + cpu_time(STDCPU,linebuffer); + + } /* for i_layer (overlayer) */ + +/********************************************* + Add propagation towards the potential step. +**********************************************/ + + vec[1] = vec[2] = 0.; + vec[3] = 1.25 / BOHR; + +/******************************************** + No scattering at pot. step +********************************************/ + + Amp = ld_potstep0(Amp, R_tot, beams_now, v_par->eng_v, vec); + out_int(Amp, beams_now, beams_out, v_par, res_stream); + +/******************************************** + Write cpu time to output +********************************************/ + + sprintf(linebuffer," %.1f %d ",energy * HART,n_beams_now); + cpu_time(STDWAR,linebuffer); + + + } /* end of energy loop */ + + +#ifdef CONTROL_IO + fprintf(STDCTR, "(LEED): end of energy loop: close files\n"); +#endif + + fclose(res_stream); + +#ifdef CONTROL + fprintf(STDCTR, "\n\n(LEED):\tCORRECT TERMINATION"); +#endif + +/******************************************** + Write cpu time to output +********************************************/ + + cpu_time(STDCPU,""); + +/******************************************** + set exit status explicitly +********************************************/ + + printf("The original code is working fine.\n"); + + exit(0); + +} /* end of main */ diff --git a/cleedpy/cleed/src/leed.c b/cleedpy/cleed/src/leed.c new file mode 100644 index 0000000..7e02eb9 --- /dev/null +++ b/cleedpy/cleed/src/leed.c @@ -0,0 +1,237 @@ +#include "leed.h" + +real ** leed( + struct cryst_str * bulk, + struct cryst_str *over, + struct phs_str *phs_shifts, + int energy_list_size, + real *energy_list, + struct var_str *v_par, + FILE *res_stream + ){ + + struct beams_str * beams_now=NULL; + struct beams_str * beams_set=NULL; + struct beam_str * beams_out=NULL; + struct beam_str *beams_all=NULL; + + int n_beams_now, n_beams_set; + + int i_c, i_set, offset; + int i_layer; + int energy_index; + int n_set; + + real energy; + real vec[4]; + + float **iv_curves=NULL; + + mat R_bulk=NULL, R_tot=NULL; + mat Amp=NULL; + + mat Tpp=NULL, Tmm=NULL, Rpm=NULL, Rmp=NULL; + mat Tpp_s=NULL, Tmm_s=NULL, Rpm_s=NULL, Rmp_s=NULL; + + struct eng_str eng; + + eng.ini = energy_list[0]; + eng.stp = energy_list[1] - energy_list[0]; + eng.fin = energy_list[energy_list_size-1]; + + + /* Generate beams out */ + n_set = bm_gen(&beams_all, bulk, v_par, eng.fin); + out_bmlist(&beams_out, beams_all, &eng, res_stream); + + + /* Main Energy Loop */ + + for(energy_index=0; energy_indexdmin); + + /********************************************************************* + BULK: + Loop over beam sets + + Create matrix R_bulk that will eventually contain the bulk + reflection matrix + *********************************************************************/ + + R_bulk = matalloc(R_bulk, n_beams_now, n_beams_now, NUM_COMPLEX); + + /********************************************************************* + Loop over periodic bulk layers + *********************************************************************/ + for(offset = 1, i_set = 0; i_set < n_set; i_set ++) + { + n_beams_set = bm_set(&beams_set, beams_now, i_set); + + /********************************************************** + Compute scattering matrices for bottom-most bulk layer: + - single Bravais layer or composite layer + **********************************************************/ + if( (bulk->layers + 0)->natoms == 1) + { + ms_bravl_nd( &Tpp, &Tmm, &Rpm, &Rmp, + v_par, (bulk->layers + 0), beams_set); + } + else + { + ms_compl_nd( &Tpp, &Tmm, &Rpm, &Rmp, + v_par, (bulk->layers + 0), beams_set); + } + + /********************************************************** + Loop over the other bulk layers + **********************************************************/ + + for(i_layer = 1; + ((bulk->layers+i_layer)->periodic == 1) && (i_layer < bulk->nlayers); + i_layer ++) + { + /************************************************************** + Compute scattering matrices R/T_s for a single bulk layer + - single Bravais layer or composite layer + ***************************************************************/ + + if( (bulk->layers + i_layer)->natoms == 1) + { + ms_bravl_nd ( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + else + { + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + + /*************************************************************************** + Add the single layer matrices to the rest by layer doubling + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): + (bulk->layers + i_layer)->vec_from_last + ****************************************************************************/ + + ld_2lay( &Tpp, &Tmm, &Rpm, &Rmp, + Tpp, Tmm, Rpm, Rmp, + Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_set, (bulk->layers + i_layer)->vec_from_last); + } /* for i_layer (bulk) */ + + /********************************************************************* + Layer doubling for all periodic bulk layers until convergence is + reached: + - inter layer vector is (bulk->layers + 0)->vec_from_last + **********************************************************************/ + Rpm = ld_2n( Rpm, Tpp, Tmm, Rpm, Rmp, + beams_set, (bulk->layers + 0)->vec_from_last); + + /******************************************************************* + Compute scattering matrices for top-most bulk layer if it is + not periodic. + - single Bravais layer or composite layer + **********************************************************************/ + if( i_layer == bulk->nlayers - 1 ){ + if( (bulk->layers + i_layer)->natoms == 1){ + ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + else{ + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (bulk->layers + i_layer), beams_set); + } + + /************************************************************************** + Add the single layer matrices of the top-most layer to the rest + by layer doubling: + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): + (bulk->layers + i_layer)->vec_from_last + ***************************************************************************/ + + Rpm = ld_2lay_rpm(Rpm, Rpm, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_set, (bulk->layers + i_layer)->vec_from_last); + } /* if( i_layer == bulk->nlayers - 1 ) */ + + /******************************************************* + Insert reflection matrix for this beam set into R_bulk. + ********************************************************/ + + R_bulk = matins(R_bulk, Rpm, offset, offset); + offset += n_beams_set; + + } /* for i_set */ + + /********************************************************************* + OVERLAYER + Loop over all overlayer layers + *********************************************************************/ + + for(i_layer = 0; i_layer < over->nlayers; i_layer ++) + { + /*********************************************************** + Calculate scattering matrices for a single overlayer layer + - only single Bravais layer + ************************************************************/ + if( (over->layers + i_layer)->natoms == 1) + { + ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (over->layers + i_layer), beams_now); + } + else + { + ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, + v_par, (over->layers + i_layer), beams_now); + } + /**************************************************************** + Add the single layer matrices to the rest by layer doubling: + - if the current layer is the bottom-most (i_layer == 0), + the inter layer vector is calculated from the vectors between + top-most bulk layer and origin + ( (bulk->layers + nlayers)->vec_to_next ) + and origin and bottom-most overlayer + (over->layers + 0)->vec_from_last. + + - inter layer vector is the vector between layers + (i_layer - 1) and (i_layer): (over->layers + i_layer)->vec_from_last + **********************************************************************/ + if (i_layer == 0) + { + for(i_c = 1; i_c <= 3; i_c ++) + { + vec[i_c] = (bulk->layers + bulk->nlayers - 1)->vec_to_next[i_c] + + (over->layers + 0)->vec_from_last[i_c]; + } + + R_tot = ld_2lay_rpm(R_tot, R_bulk, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_now, vec); + } + else + { + + R_tot = ld_2lay_rpm(R_tot, R_tot, Tpp_s, Tmm_s, Rpm_s, Rmp_s, + beams_now, (over->layers + i_layer)->vec_from_last); + } + + } /* for i_layer (overlayer) */ + + /********************************************* + Add propagation towards the potential step. + **********************************************/ + + vec[1] = vec[2] = 0.; + vec[3] = 1.25 / BOHR; + + /******************************************** + No scattering at pot. step + ********************************************/ + + Amp = ld_potstep0(Amp, R_tot, beams_now, v_par->eng_v, vec); + out_int(Amp, beams_now, beams_out, v_par, res_stream); + + } /* end of energy loop */ + + return iv_curves; +} diff --git a/cleedpy/cleed/test_cleed.c b/cleedpy/cleed/test_cleed.c index 4aafca6..6713063 100644 --- a/cleedpy/cleed/test_cleed.c +++ b/cleedpy/cleed/test_cleed.c @@ -68,6 +68,9 @@ int n_beams_now, n_beams_set; int i_set, n_set, offset; int i_layer; +int energy_list_size, energy_index; +real *energy_list; + real energy; real vec[4]; @@ -219,7 +222,6 @@ FILE *res_stream; inp_rdbul_nd(&bulk, &phs_shifts, bul_file); inp_rdpar(&v_par, &eng, bulk, bul_file); inp_rdovl_nd(&over, &phs_shifts, bulk, par_file); - n_set = bm_gen(&beams_all, bulk, v_par, eng->fin); inp_showbop(bulk, over, phs_shifts); @@ -230,7 +232,6 @@ FILE *res_stream; } out_head (bulk, res_stream); - out_bmlist(&beams_out, beams_all, eng, res_stream); /********************************************************************* Prepare some often used parameters. @@ -243,310 +244,20 @@ FILE *res_stream; fprintf(STDCTR, "(LEED_TEMP): E_ini = %.1f, E_fin = %.1f, E_stp %.1f\n", eng->ini*HART, eng->fin*HART, eng->stp*HART); - fprintf(STDCTR, "(LEED_TEMP): n_set = %d\n", n_set); + //fprintf(STDCTR, "(LEED_TEMP): lset = %d\n", n_set); #endif -/********************************************************************* - Energy Loop -*********************************************************************/ - for( energy = eng->ini; energy < eng->fin + E_TOLERANCE; energy += eng->stp) + // Construct energy list + energy_list_size = (eng->fin - eng->ini)/eng->stp + 1; + energy_list = (real *) malloc(energy_list_size * sizeof(real)); + for (energy_index=0; energy_indexini + energy_index * eng->stp; + } - pc_update(v_par, phs_shifts, energy); - n_beams_now = bm_select(&beams_now, beams_all, v_par, bulk->dmin); - -#ifdef CONTROL - fprintf(STDCTR, "(LEED_TEMP):\n\t => E = %.1f eV (%d beams used) <=\n\n", - v_par->eng_v*HART, n_beams_now); -#endif - - -/********************************************************************* - BULK: - Loop over beam sets - - Create matrix R_bulk that will eventually contain the bulk - reflection matrix -*********************************************************************/ - - R_bulk = matalloc(R_bulk, n_beams_now, n_beams_now, NUM_COMPLEX); - for(offset = 1, i_set = 0; i_set < n_set; i_set ++) - { - n_beams_set = bm_set(&beams_set, beams_now, i_set); - -/********************************************************************* - Loop over periodic bulk layers -*********************************************************************/ - - /********************************************************** - Compute scattering matrices for bottom-most bulk layer: - - single Bravais layer or composite layer - **********************************************************/ - -#ifdef CONTROL_FLOW - fprintf(STDCTR, "(LEED_TEMP periodic): bulk layer %d/%d, set %d/%d\n", - 0, bulk->nlayers - 1, i_set, n_set - 1); -#endif - - if( (bulk->layers + 0)->natoms == 1) - { - ms_bravl_nd( &Tpp, &Tmm, &Rpm, &Rmp, - v_par, (bulk->layers + 0), beams_set); - } - else - { - ms_compl_nd( &Tpp, &Tmm, &Rpm, &Rmp, - v_par, (bulk->layers + 0), beams_set); - } - -#ifdef CONTROL_X - fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Tpp:"); - matshow(Tpp); - fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Tmm:"); - matshow(Tmm); - fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Rpm:"); - matshow(Rpm); - fprintf(STDCTR, "(LEED_TEMP): after ms_bravl_nd: Rmp:"); - matshow(Rmp); -#endif - - /********************************************************** - Loop over the other bulk layers - **********************************************************/ - - for(i_layer = 1; - ( (bulk->layers+i_layer)->periodic == 1) && - (i_layer < bulk->nlayers); - i_layer ++) - { -#ifdef CONTROL_FLOW - fprintf(STDCTR, "(LEED_TEMP periodic): bulk layer %d/%d, set %d/%d\n", - i_layer, bulk->nlayers - 1, i_set, n_set - 1); -#endif - - /************************************************************** - Compute scattering matrices R/T_s for a single bulk layer - - single Bravais layer or composite layer - ***************************************************************/ - - if( (bulk->layers + i_layer)->natoms == 1) - { - ms_bravl_nd ( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (bulk->layers + i_layer), beams_set); - } - else - { - ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (bulk->layers + i_layer), beams_set); - } - - /*************************************************************************** - Add the single layer matrices to the rest by layer doubling - - inter layer vector is the vector between layers - (i_layer - 1) and (i_layer): - (bulk->layers + i_layer)->vec_from_last - ****************************************************************************/ -#ifdef CONTROL_FLOW - fprintf(STDCTR, - "(LEED_TEMP): before ld_2lay vec_from...(%.2f %.2f %.2f)\n", - (bulk->layers + i_layer)->vec_from_last[1] * BOHR, - (bulk->layers + i_layer)->vec_from_last[2] * BOHR, - (bulk->layers + i_layer)->vec_from_last[3] * BOHR); -#endif - - ld_2lay( &Tpp, &Tmm, &Rpm, &Rmp, - Tpp, Tmm, Rpm, Rmp, - Tpp_s, Tmm_s, Rpm_s, Rmp_s, - beams_set, (bulk->layers + i_layer)->vec_from_last); - - } /* for i_layer (bulk) */ - - /********************************************************************* - Layer doubling for all periodic bulk layers until convergence is - reached: - - inter layer vector is (bulk->layers + 0)->vec_from_last - **********************************************************************/ -#ifdef CONTROL_FLOW - fprintf(STDCTR, "(LEED_TEMP): before ld_2n vec_from...(%.2f %.2f %.2f)\n", - (bulk->layers + 0)->vec_from_last[1] * BOHR, - (bulk->layers + 0)->vec_from_last[2] * BOHR, - (bulk->layers + 0)->vec_from_last[3] * BOHR); -#endif - - Rpm = ld_2n( Rpm, Tpp, Tmm, Rpm, Rmp, - beams_set, (bulk->layers + 0)->vec_from_last); - - /******************************************************************* - Compute scattering matrices for top-most bulk layer if it is - not periodic. - - single Bravais layer or composite layer - **********************************************************************/ - - if( i_layer == bulk->nlayers - 1 ) - { -#ifdef CONTROL_FLOW - fprintf(STDCTR, - "(LEED_TEMP not periodic): bulk layer %d/%d, set %d/%d\n", - i_layer, bulk->nlayers - 1, i_set, n_set - 1); -#endif - - if( (bulk->layers + i_layer)->natoms == 1) - { - ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (bulk->layers + i_layer), beams_set); - } - else - { - ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (bulk->layers + i_layer), beams_set); - } - - /************************************************************************** - Add the single layer matrices of the top-most layer to the rest - by layer doubling: - - inter layer vector is the vector between layers - (i_layer - 1) and (i_layer): - (bulk->layers + i_layer)->vec_from_last - ***************************************************************************/ - - Rpm = ld_2lay_rpm(Rpm, Rpm, Tpp_s, Tmm_s, Rpm_s, Rmp_s, - beams_set, (bulk->layers + i_layer)->vec_from_last); - - } /* if( i_layer == bulk->nlayers - 1 ) */ - - /******************************************************* - Insert reflection matrix for this beam set into R_bulk. - ********************************************************/ - - R_bulk = matins(R_bulk, Rpm, offset, offset); - offset += n_beams_set; - - /************************* - Write cpu time to output - **************************/ - - sprintf(linebuffer,"(LEED_TEMP): bulk layers set %d, E = %.1f", - i_set, energy*HART); - cpu_time(STDCPU,linebuffer); - } /* for i_set */ - -/********************************************************************* - OVERLAYER - Loop over all overlayer layers -*********************************************************************/ - - for(i_layer = 0; i_layer < over->nlayers; i_layer ++) - { -#ifdef CONTROL_FLOW - fprintf(STDCTR, "(LEED_TEMP): overlayer %d/%d\n", i_layer, over->nlayers - 1); -#endif - /*********************************************************** - Calculate scattering matrices for a single overlayer layer - - only single Bravais layer - ************************************************************/ - - if( (over->layers + i_layer)->natoms == 1) - { - ms_bravl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (over->layers + i_layer), beams_now); - } - else - { - ms_compl_nd( &Tpp_s, &Tmm_s, &Rpm_s, &Rmp_s, - v_par, (over->layers + i_layer), beams_now); - } - -#ifdef CONTROL_X - fprintf(STDCTR, "\n(LEED_TEMP):overlayer %d ...\n",i_layer); - fprintf(STDCTR, "\n(LEED_TEMP): Tpp:\n"); - matshowabs(Tpp_s); - fprintf(STDCTR, "\n(LEED_TEMP): Tmm:\n"); - matshowabs(Tmm_s); - fprintf(STDCTR, "\n(LEED_TEMP): Rpm:\n"); - matshowabs(Rpm_s); - fprintf(STDCTR, "\n(LEED_TEMP): Rmp:\n"); - matshowabs(Rmp_s); -#endif - - /**************************************************************** - Add the single layer matrices to the rest by layer doubling: - - if the current layer is the bottom-most (i_layer == 0), - the inter layer vector is calculated from the vectors between - top-most bulk layer and origin - ( (bulk->layers + nlayers)->vec_to_next ) - and origin and bottom-most overlayer - (over->layers + 0)->vec_from_last. - - - inter layer vector is the vector between layers - (i_layer - 1) and (i_layer): (over->layers + i_layer)->vec_from_last - **********************************************************************/ - - if (i_layer == 0) - { - for(i_c = 1; i_c <= 3; i_c ++) - { - vec[i_c] = (bulk->layers + bulk->nlayers - 1)->vec_to_next[i_c] - + (over->layers + 0)->vec_from_last[i_c]; - } - -#ifdef CONTROL_FLOW - fprintf(STDCTR, - "(LEED):over0 before ld_2lay_rpm vec..(%.2f %.2f %.2f)\n", - vec[1] * BOHR,vec[2] * BOHR, vec[3] * BOHR); -#endif - - R_tot = ld_2lay_rpm(R_tot, R_bulk, Tpp_s, Tmm_s, Rpm_s, Rmp_s, - beams_now, vec); - } - else - { -#ifdef CONTROL_FLOW - fprintf(STDCTR, - "(LEED):over%d before ld_2lay_rpm vec..(%.2f %.2f %.2f)\n", - i_layer,(over->layers + i_layer)->vec_from_last[1] * BOHR, - (over->layers + i_layer)->vec_from_last[2] * BOHR, - (over->layers + i_layer)->vec_from_last[3] * BOHR); -#endif - - R_tot = ld_2lay_rpm(R_tot, R_tot, Tpp_s, Tmm_s, Rpm_s, Rmp_s, - beams_now, (over->layers + i_layer)->vec_from_last); - } - - /************************** - Write cpu time to output - **************************/ - - sprintf(linebuffer,"(LEED): overlayer %d, E = %.1f", - i_layer, energy * HART); - cpu_time(STDCPU,linebuffer); - - } /* for i_layer (overlayer) */ - -/********************************************* - Add propagation towards the potential step. -**********************************************/ - - vec[1] = vec[2] = 0.; - vec[3] = 1.25 / BOHR; - -/******************************************** - No scattering at pot. step -********************************************/ - - Amp = ld_potstep0(Amp, R_tot, beams_now, v_par->eng_v, vec); - out_int(Amp, beams_now, beams_out, v_par, res_stream); - -/******************************************** - Write cpu time to output -********************************************/ - - sprintf(linebuffer," %.1f %d ",energy * HART,n_beams_now); - cpu_time(STDWAR,linebuffer); - - - } /* end of energy loop */ - + leed(bulk, over, phs_shifts, energy_list_size, energy_list, v_par, res_stream); + printf("Finished leed\n"); #ifdef CONTROL_IO fprintf(STDCTR, "(LEED): end of energy loop: close files\n"); @@ -568,6 +279,7 @@ FILE *res_stream; set exit status explicitly ********************************************/ + printf("The new code is working\n"); exit(0); } /* end of main */ diff --git a/examples/cleed_example_old/leed.res_origin b/examples/cleed_example_old/leed.res_origin new file mode 100644 index 0000000..1a5e7da --- /dev/null +++ b/examples/cleed_example_old/leed.res_origin @@ -0,0 +1,171 @@ +# ####################################### # +# output from CLEED # +# ####################################### # +#vn 0.0 (test version GH/11.08.95) +#ts Wed Jan 10 10:38:33 2024 +# +#en 108 70.000000 498.100000 4.000000 +#bn 55 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6.103155e-05 5.612120e-05 5.607848e-05 6.105724e-05 5.611951e-05 6.107991e-05 6.104682e-05 5.606310e-05 6.107029e-05 5.607573e-05 diff --git a/examples/cleed_example_old/run.sh b/examples/cleed_example_old/run.sh index 158ca4c..52374d9 100755 --- a/examples/cleed_example_old/run.sh +++ b/examples/cleed_example_old/run.sh @@ -1,4 +1,4 @@ export CLEED_PHASE=./PHASE -EXECUTABLE=../../cleedpy/cleed/test_nsym_lp +EXECUTABLE=../../cleedpy/cleed/build/test_cleed ${EXECUTABLE} -i Ni111_Cu.inp