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phydynR-tennessee

Models and scripts used for phylodynamics analysis described in:

  • Ann Dennis et al. (2018), HIV-1 transmission clustering and phylodynamics highlight the important role of young men who have sex with men, ARHR

These analyses are not reproducible with the associated data sets which may be available upon request.

These analyses use the phdynR and skyspline packages.

For model equations see m5.4.R.

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