- Updated function parameter inputs across whole package
- Updated quickstart vignette, added single-cell vignette
- Added functions aggregateBarcodes, filterBarcodes, plotUmiFilterThresholds, plotUmiPerBarcode, readBartabCounts, plotBarcodesPerCell for single-cell data and plotSampleCumSum for bulk data
- removed deprecated plotLibraryCumSum, plotLibraryDiversity, proportionalBubbleplot
- Added single cell QC plotting functions plotCellsPerGroup, plotMetrics, plotClusterEnrichment, plotCellsinClusters
- Updated plotting functions for plotBarcodeBoxplot, plotAbundanceLines
- Removed deprecated single cell workflows from package (workflow now in BARtab)
- Updated plotting functions for plotOrderedBubble, plotBarcodeBubble, plotBarcodeHeatmap
- Added dose escalation test dataset to package
- Updated plotting functions
- Updated plotDetectedBarcodes to color and reorder factors according to user input.
- Updated quickstart vignette detailing a complete analysis workflow.
- Updated plotBarcodeTimeseries to take top n barcodes. Speeds up plotting by only focusing on barcodes of interest
- Included current versions of all plotting functions to package.
- Added a
NEWS.md
file to track changes to the package.