diff --git a/DESCRIPTION b/DESCRIPTION index e7c8879e..b6e0d21f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -57,4 +57,4 @@ Encoding: UTF-8 Language: en-GB LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.1 diff --git a/R/cfr_time_varying.R b/R/cfr_time_varying.R index 486902fc..028ede75 100644 --- a/R/cfr_time_varying.R +++ b/R/cfr_time_varying.R @@ -48,11 +48,11 @@ #' for each \eqn{t}, where \eqn{\theta} represents the severity measure of #' interest. #' -#' The epidemiological delay distribution passed to `epidist` is used to obtain -#' a probability mass function parameterised by time; i.e. \eqn{f(t)} which -#' gives the probability a case has a known outcomes (usually, death) at time -#' \eqn{t}, parameterised with disease-specific parameters before it is supplied -#' here. +#' The epidemiological delay distribution passed to `delay_density` is used to +#' obtain a probability mass function parameterised by time; i.e. \eqn{f(t)} +#' which gives the probability a case has a known outcomes (usually, death) at +#' time \eqn{t}, parameterised with disease-specific parameters before it is +#' supplied here. #' #' **Note** that the function arguments `burn_in` and `smoothing_window` are not #' explicitly used in this calculation. `burn_in` controls how many estimates at diff --git a/man/cfr_time_varying.Rd b/man/cfr_time_varying.Rd index 7dd007b7..8b4ff029 100644 --- a/man/cfr_time_varying.Rd +++ b/man/cfr_time_varying.Rd @@ -80,11 +80,11 @@ We use maximum likelihood estimation to determine the value of \eqn{\theta_t} for each \eqn{t}, where \eqn{\theta} represents the severity measure of interest. -The epidemiological delay distribution passed to \code{epidist} is used to obtain -a probability mass function parameterised by time; i.e. \eqn{f(t)} which -gives the probability a case has a known outcomes (usually, death) at time -\eqn{t}, parameterised with disease-specific parameters before it is supplied -here. +The epidemiological delay distribution passed to \code{delay_density} is used to +obtain a probability mass function parameterised by time; i.e. \eqn{f(t)} +which gives the probability a case has a known outcomes (usually, death) at +time \eqn{t}, parameterised with disease-specific parameters before it is +supplied here. \strong{Note} that the function arguments \code{burn_in} and \code{smoothing_window} are not explicitly used in this calculation. \code{burn_in} controls how many estimates at