diff --git a/algorithms/zhu.yaml b/algorithms/zhu.yaml new file mode 100644 index 0000000..9d6eb14 --- /dev/null +++ b/algorithms/zhu.yaml @@ -0,0 +1,65 @@ +--- +# Description of a seizure detection algorithm +title: "utomated Seizure Detection using Transformer Models on Multi-Channel EEGs" +image: "ghcr.io/esl-epfl/zhu_2022:latest" +authors: + - given-names: Yuanda + family-names: Zhu + affiliation: Georgia Institute of Technology + - given-names: Clément + family-names: Samanos + affiliation: EPFL-ESL + - given-names: Jonathan + family-names: Dan + email: jonathan.dan@epfl.ch + affiliation: EPFL-ESL + orcid: 'https://orcid.org/0000-0002-2338-572X' +version: 0.1 +date-released: "2023-11-14" +abstract: > + Epilepsy is a prevalent neurological disorder characterized by recurring + seizures, affecting approximately 50 million individuals globally. Given the + potential severity of the associated complications, early and accurate + seizure detection is crucial. In clinical practice, scalp + electroencephalograms (EEGs) are non-invasive tools widely used in seizure + detection and localization, aiding in the classification of seizure types. + However, manual EEG annotation is labor-intensive, costly, and suffers from + low inter-rater agreement, necessitating automated approaches. To address + this, we introduce a novel deep learning framework, combining a convolutional + neural network (CNN) module for temporal and spatial feature extraction from + multi-channel EEG data, and a transformer encoder module to capture long-term + sequential information. We conduct extensive experiments on a public EEG + seizure detection dataset, achieving an unweighted average F1 score of 0.731, + precision of 0.724, and recall (sensitivity) of 0.744. We further replicate + several EEG analysis pipelines from literature and demonstrate that our + pipeline outperforms, current state-of-the-art approaches. This work provides + a significant step forward in automated seizure detection. By enabling a more + effective and efficient diagnostic tool, it has the potential to + significantly impact clinical practice, optimizing patient care and outcomes + in epilepsy treatment. + This model was trained on TUH EEG Seizure Corpus v2.0.3 +license: MIT +repository: https://github.com/esl-epfl/zhu_2023 + +# List all datasets that were used to train this algorithm +Dataset: + - title: "TUH EEG Seizure Corpus v2.0.3" + license: "https://isip.piconepress.com/projects/nedc/forms/tuh_eeg.pdf" + identifiers: + - description: > + This database is a subset of the TUH EEG Corpus that was collected + from archival records of clinical EEG at Temple University Hospital + recorded between 2002 – 2017. From this large dataset, a subset of + files with a high likelihood of containing seizures was retained + based on clinical notes and on the output of seizure detection + algorithms. + V2.0.0 contains 7377 .edf files from 675 subjects for a total + duration of 1476 hours of data. The files are mostly short + (avg. 10 minutes). The dataset has heterogeneous sampling frequency + and number of channels. All files are acquired at a minimum of 250 + Hz. A minimum of 17 EEG channels is available in all recordings. + They are positioned according to the 10-20 system. + The annotations are provided as .csv and contain the start time, + stop, channel and seizure type. + type: url + value: "https://isip.piconepress.com/projects/nedc/html/tuh_eeg/" \ No newline at end of file