diff --git a/.github/workflows/r-cmd-check.yml b/.github/workflows/r-cmd-check.yml deleted file mode 100644 index e821940..0000000 --- a/.github/workflows/r-cmd-check.yml +++ /dev/null @@ -1,63 +0,0 @@ -# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples -# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help -on: - push: - branches: [main, master] - pull_request: - branches: [main, master] - -name: R-CMD-check - -jobs: - R-CMD-check: - runs-on: ${{ matrix.config.os }} - - name: ${{ matrix.config.os }} (${{ matrix.config.r }}) - - strategy: - fail-fast: false - matrix: - config: - - {os: macos-latest, r: 'release'} - - {os: windows-latest, r: 'release'} - - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} - - {os: ubuntu-latest, r: 'release'} - - {os: ubuntu-latest, r: 'oldrel-1'} - - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - R_KEEP_PKG_SOURCE: yes - - steps: - - uses: actions/checkout@v3 - - - uses: r-lib/actions/setup-pandoc@v2 - - - uses: r-lib/actions/setup-r@v2 - with: - r-version: ${{ matrix.config.r }} - http-user-agent: ${{ matrix.config.http-user-agent }} - use-public-rspm: true - - - name: Set up Python 3.9 - uses: actions/setup-python@v3 - with: - python-version: 3.9 - - - name: Install dependencies - run: | - install.packages(c("remotes", "rcmdcheck")) - remotes::install_deps(dependencies = TRUE) - install.packages("BiocManager") - BiocManager::install("mzR") - reticulate::install_miniconda() - reticulate::conda_create('r-reticulate', packages = c('python==3.9', 'numpy', 'scipy', 'pandas')) - reticulate::conda_install('r-reticulate', packages = c('aston'), pip=TRUE) - shell: Rscript {0} - - - if: runner.os == 'macOS' - run: echo "options(reticulate.conda_binary = reticulate:::miniconda_conda())" >> .Rprofile - - - uses: r-lib/actions/check-r-package@v2 - with: - upload-snapshots: true