From a4c552ae3285d3839dbd32b28c5e56e0eb8454fa Mon Sep 17 00:00:00 2001
From: Ethan Bass <ethanbass@gmail.com>
Date: Mon, 8 May 2023 18:51:21 -0400
Subject: [PATCH] test ncdf on CI

no bioconductor
---
 .github/workflows/r.yml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/r.yml b/.github/workflows/r.yml
index 297fef9..4a60e4c 100644
--- a/.github/workflows/r.yml
+++ b/.github/workflows/r.yml
@@ -47,9 +47,8 @@ jobs:
       - name: Install dependencies
         run: |
           install.packages(c("remotes", "rcmdcheck"))
+          install.packages(c("ncdf4"))
           remotes::install_deps(dependencies = TRUE)
-          install.packages("BiocManager")
-          BiocManager::install("mzR")
           reticulate::install_miniconda()
           reticulate::conda_create('r-reticulate', packages = c('python==3.9', 'numpy', 'scipy', 'pandas'))
           reticulate::conda_install('r-reticulate', packages = c('aston'), pip=TRUE)