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instructions to install entab on mac
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ethanbass authored Jul 25, 2022
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Expand Up @@ -64,6 +64,14 @@ To install Aston, call the `configure_aston()` function to install miniconda alo
devtools::install_github("https://github.com/bovee/entab/", subdir = "entab-r")
```

###### Mac OS X

If you're using RStudio on a Mac, you will likely need to tell R Studio where to find cargo (the Rust package manager) by adding it to your path. You can do this by following the instructions below:
1. Open your `.Rprofile` file in your home directory (you may need to press Command + Shift + period to reveal hidden files).
2. Add `Sys.setenv(PATH = paste0("/Users/<user>/.cargo/bin:", Sys.getenv("PATH")))`, replacing <user> with your username. This will append Cargo to your path when you open RStudio.
3. Save your `.Rprofile` file and restart R Studio.
4. Install Entab from GitHub.

##### **ThermoRawFileParser**

Thermo RAW files can be converted by calling the [ThermoRawFileParser](https://github.com/compomics/ThermoRawFileParser) on the command-line. To install the ThermoRawFileParser, follow the instructions [here](https://github.com/compomics/ThermoRawFileParser). If you are running Linux or Mac OS X, you will also need to install mono, following the instructions provided at the link. In addition, when you use chromConverter to convert Thermo RAW files for the first time you will be asked to enter the path to the program.
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