csic_manipulation.yaml

---
user_name: "csic"
scenario:
  name: "Standing during manipulation"
  description: "Standing while reaching, grasping and manipulating objects with
    the upper limbs."
  image: csic-manipulation/img/csic.jpg

protocol:
  - id: 95
    name: "csic_manip_lower"
    name_readable: "Standing during manipulation: lower-lifting sagittal plane"
    definition: "Lifting a box, which could be empty or loaded with the 10% of
      the subject’s weight, its placement on a horizontal support assembly at
      different heights, and the final lowering phase in order to bring the box
      back to its initial position.
      The subject must have performed 3 lifts with an empty box as well as 3
      lifts with a loaded one.
      This experiment is performed in the sagittal frame and between sagittal
      and frontal planes.
      The testbed is a non-reflectant modular structure consisting of a fixed
      frame and mobile bars, in order to be easily adjusted to the height of
      the knee and of the shoulder of each subject.
      On one hand, the fixed body is formed by 3 vertical bars, 2 of them are
      1.75 metres-long and the third one is 2 metres-long; connected to 4
      horizontal 1 metre-long bars at their ends.
      Moreover, 2 more 1 metre-long bars are used to close the square at
      floor-level in order to give more consistency to the structure.
      On the other hand, the mobile part is made up of four 1 metre-long bars
      fit in the fixed frame (2 bars per wall of the structure).
      These bars are mobile thanks to its design: a guiding system which allows
      moving the horizontal bar along the vertical ones with ease and 2 toggles
      on each bar to avoid time-consuming screwing tasks.
      On top of each mobile bar and at the middle region of it, there is a
      30x50 cm wooden shelf screwed to the bar, where the box should be placed
      during the lifting and the lowering phases."
    image: csic-manipulation/img/csic_manip_lower.jpg
    keywords: [manipulation, balance, stability]
    bipedal_system: [human, prosthesis, exoskeleton]
    pi_algo: [csic_manip]
    duration: "2min per run"
    controlled_variables:
      - name: box_load
        definition: The box can be loaded (10% of subjects weight) or not
        type: bool
        range: True / False
        unit: bool
      - name: lift_height
        definition: Floor-to-knee, floor-to-shoulder and knee-to-shoulder
        type: vector
        range: na
        unit: m
    testbed:
      - item: "Testbed: non-reflectant modular structure"
        type: other
        file_sheet: undef
      - item: "Optoelectronic motion capture system"
        type: sensor
        file_sheet: "https://docs.vicon.com/display/Nexus210"
      - item: "Loads.
          The loaded configuration corresponds to the 10% of the body weight of
          the subject.
          Adjustable weights for wrist and ankle of different weight (i.e.
          0.5 kg, 1 kg and 2 kg) are combined to get the corresponding load mass
          that should be put inside the box."
        type: other
        file_sheet: "https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-0-5kg-domyos/_/R-p-152954?mc=8358970&c=AZUL_AZUL%20TURQUESA  https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-1kg-domyos/_/R-p-152952?mc=8358972&c=AMARILLO  https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-2kg-domyos/_/R-p-152955"

    step_description: "No definition"
    step_list:
      - description: Place the optical markers onto the subject''s body and take
          the required anthropometric measurements.
        detail: Following the VICON''s "Full Body Plug in Gait" marker set
          specifications (https://docs.vicon.com/display/Nexus26/Full+body+modeling+with+Plug-in+Gait)
          and  adding 8 clusters (thighs, tibias, feet, pelvis, chest).
      - description: Place the subject at the starting point.
      - description: Take a static capture of the subject.
        detail: Subject adopts the motor bike position (upright posture, both
          arms at shoulder''s height with upper arm and forearm at 90 degrees)
          facing the modular structure.
      - description: State the subject to grasp the box put it on a specific
          height and bring it back to its original position for three times.
        detail: Subjects hold the box with both hands by the handles located at
          its sides, lift it and place it at the appropriate position, according
          to the Lift Type variable.
          Each time the subject leaves the box in any shelf, he/she must return
          to the anatomic position and rest for 3 seconds.
      - description: Randomly change the load condition of the box and decide
          the next height to be performed.
        detail: Researcher should follow a previously prepared order to do the
          tests.
          However, this order has to be different for every subject to ensure
          the overall protocol presents the different experiemental conditions
          at randomized order for each subject.
      - description: Repeat the procedure starting at step 5, until completing
          the 3 heights with and without load.
        detail: Between different experimental conditions, ask the subject how
          is he/she feeling.
          The subject has 30 seconds of recovery, if needed.
    has_multiple_run: true
    has_multiple_condition: true
    has_multiple_subject: true

  - id: 96
    name: "csic_manip_load"
    name_readable: "Standing during manipulation: lateral load transfer"
    definition: "Lifting a box, which could be empty or loaded with the 10% of
      the subject’s weight, its placement on a horizontal support assembly at
      different heights involving sagittal rotation, and the final lowering
      phase in order to bring the box back to its initial position.
      The subject must have performed 3 lifts with an empty box as well as
      3 lifts with a loaded one.
      The testbed is a non-reflectant modular structure consisting of a fixed
      frame and mobile bars, in order to be easily adjusted to the height of
      the knee and of the shoulder of each subject.
      On one hand, the fixed body is formed by 3 vertical bars, 2 of them are
      1.75 metres-long and the third one is 2 metres-long; connected to 4
      horizontal 1 metre-long bars at their ends.
      Moreover, 2 more 1 metre-long bars are used to close the square at
      floor-level in order to give more consistency to the structure.
      On the other hand, the mobile part is made up of four 1 metre-long bars
      fit in the fixed frame (2 bars per wall of the structure).
      These bars are mobile thanks to its design: a guiding system which allows
      moving the horizontal bar along the vertical ones with ease and 2 toggles
      on each bar to avoid time-consuming screwing tasks.
      On top of each mobile bar and at the middle region of it, there is a
      30x50 cm wooden shelf screwed to the bar, where the box should be placed
      during the lifting and the lowering phases."
    image: csic-manipulation/img/csic_manip_load.jpg
    keywords: [manipulation, balance, stability]
    bipedal_system: [human, prosthesis, exoskeleton]
    pi_algo: [csic_manip]
    duration: "2min per run"
    controlled_variables:
      - name: box_load
        definition: The box can be loaded (10% of subjects weight) or not
        type: bool
        range: True / False
        unit: bool
      - name: lift_height
        definition: Floor-to-knee, floor-to-shoulder and knee-to-shoulder
        type: vector
        range: na
        unit: m
    testbed:
      - item: "Testbed: non-reflectant modular structure"
        type: other
        file_sheet: undef
      - item: "Optoelectronic motion capture system"
        type: sensor
        file_sheet: "https://docs.vicon.com/display/Nexus210"
      - item: "Loads.
          The loaded configuration corresponds to the 10% of the body weight of
          the subject.
          Adjustable weights for wrist and ankle of different weight (i.e.
          0.5 kg, 1 kg and 2 kg) are combined to get the corresponding load mass
          that should be put inside the box."
        type: other
        file_sheet: "https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-0-5kg-domyos/_/R-p-152954?mc=8358970&c=AZUL_AZUL%20TURQUESA  https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-1kg-domyos/_/R-p-152952?mc=8358972&c=AMARILLO  https://www.decathlon.es/es/p/lastres-pesas-tobillos-munecas-2-x-2kg-domyos/_/R-p-152955"
    step_description: "No definition"
    step_list:
      - description: Place the optical markers onto the subject''s body and take
          the required anthropometric measurements.
        detail: Following the VICON''s "Full Body Plug in Gait" marker set
          specifications (https://docs.vicon.com/display/Nexus26/Full+body+modeling+with+Plug-in+Gait)
          and  adding 8 clusters (thighs, tibias, feet, pelvis, chest).
      - description: Place the subject at the starting point.
      - description: Launch the Data collection software.
      - description: Take a static capture of the subject.
        detail: Subject adopts the motor bike position (upright posture, both
          arms at shoulder''s height with upper arm and forearm at 90 degrees)
          facing the modular structure.
      - description: State the subject to grasp the box put it on a specific
          height involving sagittal torsion and bring it back to its original
          position three times.
        detail: Subjects transfer the box to the shelf located at same height in
          the perpendicular wall of the structure; in other words, they carry
          the box from the sagittal to the frontal plane.
          After placing it, subjects return to the anatomic position and rest
          for 3 seconds.
      - description: Stop the data collection when all the repetitions are done
          and the subject is vertical.
      - description: Randomly change the load condition of the box and decide
          the next height to be performed.
        detail: Researcher should follow a previously prepared order to do the
          tests.
          However, this order has to be different for every subject to ensure
          the overall protocol presents the different experiemental conditions
          at randomized  order for each subject.
      - description: Repeat the procedure starting at step 5, until completed
          the 2 heights with and without load.
        detail: Between different experimental conditions, ask the subject how
          is he/she feeling. The subject has 30 seconds of recovery, if needed.
    has_multiple_run: true
    has_multiple_condition: true
    has_multiple_subject: true
pi:
  - name: spine_rom
    name_readable: "Spine Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: hip_rom
    name_readable: "Hip Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: knee_rom
    name_readable: "Knee Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: ankle_rom
    name_readable: "Ankle Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: shoulder_rom
    name_readable: "Shoulder Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: elbow_rom
    name_readable: "Elbow Range of Motion (RoM)"
    description: "Ratio of joint angles calculated as the exoskeleton condition
      relative to the free condition, with load and lift type factors constant
      within a particular ratio."
    unit: degree
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: antepos_stability
    name_readable: "Anteroposterior Postural Stability"
    description: "CoM or CoP position and its displacement within the base of
      support in the anterioposterior direction."
    unit: "%"
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: medio_stability
    name_readable: "Mediolateral Postural Stability"
    description: "CoM or CoP position and its displacement within the base of
      support in the mediolateral direction."
    unit: "%"
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: performance_time
    name_readable: "Performance_time"
    description: "Time needed to complete the task (number of frames divided by
      the sampling frequency) and time spent in each of the phases."
    unit: "sec"
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: spinal_load
    name_readable: "Spinal load estimation"
    description: "L4-L5 and L5-S1 shear and compression forces."
    unit: "%"
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: np
    name_readable: "Number of Velocity Peaks (NP)"
    description: "Number of peaks in the speed profile.
      The speed profile of smooth movements are single peaked, while unsmooth
      movements have higher number of speed peaks."
    unit: na
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: ldlj
    name_readable: "Log Dimensionless Jerk (LDLJ)"
    description: "Logarithm naturalis of the dimensionless jerk."
    unit: na
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
  - name: sparc
    name_readable: "Spectral Arc Length (SPARC)"
    description: "Arc length of the Fourier magnitude spectrum within the
      frequency range 0 to 20 Hz of a given speed profile."
    unit: na
    output: scalar
    intra_run_aggregation: na
    inter_run_aggregation: [[0, mean]]
    visu: undef
    inter_cond_aggregation: undef
    inter_subject_aggregation: undef
pi_algo:
  - name: csic_manip
    description: Manipulation benchmarking algorithms
    url_paper: undef
    url_code: undef
    docker_host: undef
    docker_name: undef
    pi:
      - spine_rom
      - hip_rom
      - knee_rom
      - ankle_rom
      - shoulder_rom
      - elbow_rom
      - antepos_stability
      - medio_stability
      - performance_time
      - spinal_load
      - np
      - ldlj
      - sparc
    input_files: []
    input_command: []
    language: octave
    implemented: false