expo upgrade Fails to upgrade dependencies

[ayaanqui]

Hi, I'm trying to upgrade my expo SDK from 41 to 45. However, I'm running into a bunch of issues while doing it.

Here's how I'm going about the upgrade (following https://blog.expo.dev/expo-sdk-45-f4e332954a68):

$ npm i -g expo-cli
$ expo upgrade

The first command runs fine without any issues, however the second command (expo upgrade) fails to upgrade js dependencies. Here are all the errors I got after running the command:

Your git working tree is clean
To revert the changes after this command completes, you can run the following:
  git clean --force && git reset --hard
✔ You are currently using SDK 41.0.0. Would you like to update to the latest version, 45.0.0? … yes


✔ Installed expo@^45.0.0
✔ Validated configuration.
✔ No additional changes necessary to app.json config.

✖ Failed to upgrade JavaScript devDependencies: jest-expo@^45.0.0 typescript@~4.3.5 @babel/core@^7.12.9 @types/react@~17.0.21 @types/react-dom@~17.0.11 babel-preset-expo@~9.1.0 @types/react-native@~0.67.6
✖ Failed to upgrade JavaScript dependencies: @react-native-community/[email protected] expo-constants@~13.1.1 @react-native-community/[email protected] expo-document-picker@~10.2.1 [email protected] expo-local-authentication@~12.2.0 [email protected] [email protected] expo-random@~12.2.0 expo-web-browser@~10.2.1 expo-permissions@~13.2.0 react-native-gesture-handler@~2.2.1 expo-auth-session@~3.6.1 [email protected] react-native-screens@~3.11.1 sentry-expo@^4.2.0 [email protected] expo-secure-store@~11.2.0 expo-font@~10.1.0 [email protected] react-native-reanimated@~2.8.0 expo-image-picker@~13.1.1
✔ Updated known packages to compatible versions.
✔ Removed package-lock.json and deleted node_modules.
✖ Running npm install failed. Please check npm-error.log for more information.
✖ Failed to clear packager cache with error: Can't read JSON file: /.../node_modules/expo/package.json
├─ File: /.../node_modules/expo/package.json
└─ Cause: Error: ENOENT: no such file or directory, open '/.../node_modules/expo/package.json'
✔ Cleared packager cache.
✔ Validated project

👏 Automated upgrade steps complete.
...but this doesn't mean everything is done yet!

✅ The following packages were updated:
@react-native-community/netinfo, expo-constants, @react-native-community/datetimepicker, expo-document-picker, react-native-webview, expo-local-authentication, react-native-web, react-dom, expo-random, expo-web-browser, expo-permissions, react-native-gesture-handler, expo-auth-session, react, react-native-screens, sentry-expo, react-native, expo-secure-store, expo-font, react-native-safe-area-context, react-native-reanimated, expo-image-picker, jest-expo, typescript, @babel/core, @types/react, @types/react-dom, babel-preset-expo, @types/react-native, expo

🚨 The following packages were not updated. You should check the READMEs for those repositories to determine what version is compatible with your new set of packages:
@apollo/react-hooks, @react-native-community/masked-view, @react-native-community/picker, @types/lodash, apollo-cache-inmemory, apollo-client, apollo-link, apollo-link-context, apollo-link-http, apollo-upload-client, axios, flatted, formik, graphql, intl, jshint, jwt-decode, mime, moment, native-base, react-apollo, react-native-appearance, react-native-elements, react-native-formik, react-native-keyboard-aware-scroll-view, react-native-modal-datetime-picker, react-native-paper, react-native-picker-dropdown, react-native-picker-select, react-native-safe-area-view, react-native-swipe-list-view, react-native-switch-toggle, react-native-touch-id, react-navigation, react-navigation-drawer, react-navigation-stack, react-navigation-tabs, react-redux, redux, redux-devtools-extension, redux-thunk, uri-js, yup, @graphql-codegen/cli, @graphql-codegen/fragment-matcher, @types/apollo-upload-client, @types/enzyme, @types/googlemaps, @types/jest, @types/jwt-decode, @types/mime, @types/node, @types/qs, @types/react-redux, @types/react-test-renderer, @types/redux-mock-store, @types/yup, @typescript-eslint/eslint-plugin, @typescript-eslint/parser, apollo, babel-eslint, babel-jest, enzyme, eslint, eslint-config-prettier, eslint-nibble, eslint-plugin-import, eslint-plugin-jest, eslint-plugin-jsx-a11y, eslint-plugin-prettier, eslint-plugin-react, eslint-plugin-react-native, eslint-plugin-react-native-a11y, expo-cli, graphql-codegen, npm-check-updates, prettier, react-native-testing-library, react-test-renderer, redux-mock-store, yarn

Please refer to the release notes for information on any further required steps to update and information about breaking changes:
https://blog.expo.dev/expo-sdk-45-f4e332954a68

In addition to the most recent release notes, you should go over the breaking changes from skipped releases:
- https://blog.expo.dev/expo-sdk-44-4c4b8306584a
- https://blog.expo.dev/expo-sdk-43-aa9b3c7d5541
- https://blog.expo.io/expo-sdk-42-579aee2348b6

Here's what my package.json looks like:

{
  "main": "node_modules/expo/AppEntry.js",
  "private": true,
  "scripts": {...},
  "dependencies": {
    "@apollo/react-hooks": "^3.1.5",
    "@react-native-community/datetimepicker": "6.1.2",
    "@react-native-community/masked-view": "0.1.10",
    "@react-native-community/netinfo": "8.2.0",
    "@react-native-community/picker": "1.6.0",
    "@types/lodash": "^4.14.170",
    "apollo-cache-inmemory": "^1.6.6",
    "apollo-client": "^2.6.10",
    "apollo-link": "^1.2.14",
    "apollo-link-context": "^1.0.20",
    "apollo-link-http": "^1.5.17",
    "apollo-upload-client": "^13.0.0",
    "axios": "^0.19.2",
    "expo": "^45.0.0",
    "expo-auth-session": "~3.6.1",
    "expo-constants": "~13.1.1",
    "expo-document-picker": "~10.2.1",
    "expo-font": "~10.1.0",
    "expo-image-picker": "~13.1.1",
    "expo-local-authentication": "~12.2.0",
    "expo-permissions": "~13.2.0",
    "expo-secure-store": "~11.2.0",
    "expo-web-browser": "~10.2.1",
    "flatted": "^3.0.2",
    "formik": "^2.1.4",
    "graphql": "14.6.0",
    "intl": "^1.2.5",
    "jshint": "^2.11.1",
    "jwt-decode": "^2.2.0",
    "mime": "^2.4.6",
    "moment": "^2.27.0",
    "native-base": "^2.13.8",
    "react": "17.0.2",
    "react-apollo": "^3.1.5",
    "react-dom": "17.0.2",
    "react-native": "0.68.2",
    "react-native-appearance": "~0.3.3",
    "react-native-elements": "^1.2.7",
    "react-native-formik": "^1.7.8",
    "react-native-gesture-handler": "~2.2.1",
    "react-native-keyboard-aware-scroll-view": "^0.9.1",
    "react-native-modal-datetime-picker": "^10.0.0",
    "react-native-paper": "^3.8.0",
    "react-native-picker-dropdown": "^0.1.2",
    "react-native-picker-select": "^7.0.0",
    "react-native-reanimated": "~2.8.0",
    "react-native-safe-area-context": "4.2.4",
    "react-native-safe-area-view": "^1.0.0",
    "react-native-screens": "~3.11.1",
    "react-native-swipe-list-view": "^3.1.2",
    "react-native-switch-toggle": "^1.1.4",
    "react-native-touch-id": "^4.4.1",
    "react-native-web": "0.17.7",
    "react-native-webview": "11.18.1",
    "react-navigation": "^4.3.9",
    "react-navigation-drawer": "^2.4.13",
    "react-navigation-stack": "^2.3.11",
    "react-navigation-tabs": "^2.8.13",
    "react-redux": "^7.2.0",
    "redux": "^4.0.5",
    "redux-devtools-extension": "^2.13.8",
    "redux-thunk": "^2.3.0",
    "sentry-expo": "^4.2.0",
    "uri-js": "^4.2.2",
    "yup": "^0.29.1",
    "expo-random": "~12.2.0"
  },
  "devDependencies": {
    "@babel/core": "^7.12.9",
    "@graphql-codegen/cli": "1.13.1",
    "@graphql-codegen/fragment-matcher": "1.13.1",
    "@types/apollo-upload-client": "^8.1.3",
    "@types/enzyme": "^3.10.5",
    "@types/googlemaps": "^3.39.8",
    "@types/jest": "^26.0.3",
    "@types/jwt-decode": "^2.2.1",
    "@types/mime": "^2.0.2",
    "@types/node": "^14.0.14",
    "@types/qs": "^6.9.6",
    "@types/react": "~17.0.21",
    "@types/react-dom": "~17.0.11",
    "@types/react-native": "~0.67.6",
    "@types/react-redux": "^7.1.9",
    "@types/react-test-renderer": "^16.9.2",
    "@types/redux-mock-store": "^1.0.2",
    "@types/yup": "^0.29.3",
    "@typescript-eslint/eslint-plugin": "^3.4.0",
    "@typescript-eslint/parser": "^3.4.0",
    "apollo": "2.28.3",
    "babel-eslint": "^10.1.0",
    "babel-jest": "^26.1.0",
    "babel-preset-expo": "~9.1.0",
    "enzyme": "^3.11.0",
    "eslint": "^7.3.1",
    "eslint-config-prettier": "^6.11.0",
    "eslint-nibble": "^5.1.0",
    "eslint-plugin-import": "^2.21.2",
    "eslint-plugin-jest": "^23.17.1",
    "eslint-plugin-jsx-a11y": "^6.3.1",
    "eslint-plugin-prettier": "^3.1.4",
    "eslint-plugin-react": "^7.20.0",
    "eslint-plugin-react-native": "^3.8.1",
    "eslint-plugin-react-native-a11y": "^2.0.0",
    "expo-cli": "^4.7.1",
    "graphql-codegen": "^0.4.0",
    "jest-expo": "^45.0.0",
    "npm-check-updates": "^7.0.1",
    "prettier": "^2.0.5",
    "react-native-testing-library": "^2.1.0",
    "react-test-renderer": "^16.13.1",
    "redux-mock-store": "^1.5.4",
    "typescript": "~4.3.5",
    "yarn": "^1.22.4"
  }
}

I've tried a bunch of different things, looked up similar discussions but so far nothing helped. I've even tried removing some of the dependencies and re-installing them after the upgrade but that's not working either.