The Jupyter Notebooks herein demonstrate how one can use the ncbi-datasets python library to query and download data using NCBI Datasets.
Click on the links below to launch a non-interactive viewer to explore how one can use the library. For an interactive session, we recommend using Binder.
Start with ncbi-datasets-assembly to get acquainted with the library. The ncbi-datasets-gff3 notebook further explores the use of the API to download data and parse the files within the downloaded package to extract subsets of data.
| File | Non-interactive | Binder |
|---|---|---|
| ncbi-datasets-assembly | ncbi-datasets-assembly.ipynb |  |
| ncbi-datasets-gff3 | ncbi-datasets-gff3.ipynb | |