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Am I correct in assuming you've posted this issue here mainly for informational purposes? Though serious, this does not been to be an issue with populate itself.
I discovered it using populate but you are right it's a more general issue. It's just here to spare other devs some time. And get some attention of someone who has a plan for a fix ;)
I'm going to close this one since I think we should try and solve this with the Knex adapter first which is tracked in feathersjs-ecosystem/feathers-knex#117
I made an issue here feathersjs-ecosystem/feathers-knex#117
but that affects also other dbs, because it is an issue of params being simply forwarded.
I think that sequelize is also affected in a similar way with its params.sequelize being forwarded and applied, see:
https://github.com/feathersjs/feathers-sequelize/blob/master/src/index.js#L48
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