DESCRIPTION

Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
    Proteomics
Version: 1.33.3
Authors@R: c(person("Christian", "Panse", 
        email = "cp@fgcz.ethz.ch",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0003-1975-3064")),
    person("Jonas", "Grossmann",
        email = "jg@fgcz.ethz.ch",
	role = "aut",
	comment = c(ORCID = "0000-0002-6899-9020")),
    person("Christian", "Trachsel",
	role = "aut"),
    person("Witold E.", "Wolski",
	email = "wew@fgcz.ethz.ch",
	role = "ctb"))
Depends: R (>= 4.1),
    DBI (>= 0.5),
    methods (>= 3.3),
    protViz (>= 0.7),
    RSQLite (>= 1.1),
    seqinr (>= 3.3)
Suggests: BiocGenerics,
    BiocStyle (>= 2.2),
    knitr (>= 1.15),
    rmarkdown,
    RUnit (>= 0.4)
Description: provides a functions for generating spectra libraries
    that can be used for MRM SRM MS workflows in proteomics. The
    package provides a BiblioSpec reader, a function which can add
    the protein information using a FASTA formatted amino acid
    file, and an export method for using the created library in the
    Spectronaut software. The package is developed, tested and used
    at the Functional Genomics Center Zurich <https://fgcz.ch>.
License: GPL-3
URL: http://bioconductor.org/packages/specL/
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
    AllGenerics.R specL.R specLSet.R cdsw.R zzz.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
BugReports: https://github.com/fgcz/specL/issues
VignetteBuilder: knitr