Release fibertools-rs v0.4.1

fiberseq · Mar 20, 2024 · a123dac · a123dac
1 parent 61967b4
commit a123dac
Showing 1 changed file with 74 additions and 31 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,44 +5,23 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and the project tries but probably doesn't to adhere to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## 0.4.0 (2024-03-20)
-
-<csr-id-212b2c97b6e796aba879c92822640abe15561a36/>
-<csr-id-285db7d2c044de140ed550bbe2bf617233b6f55e/>
-<csr-id-17b8cb6642bbee5f0e2813515d8256516dccb48d/>
-<csr-id-cbdda1a80fd3a06472b4ef3123949b5d1afa46ad/>
-<csr-id-1d7de118fbf56e6fbaa5e895f3ce0e1931c8f1be/>
-<csr-id-9a96cb31a28c25cbcd3f01a87b6f976071b0899e/>
-<csr-id-8a581721e0f45b6d6e774b38f7201142bd1f9eba/>
-<csr-id-2be96e24685037d23d7b9f1a8a4e18e53c5dda4a/>
-<csr-id-0b8f6a299120760452091ee3f14a4442d3876637/>
-
-### Chore
-
- - <csr-id-212b2c97b6e796aba879c92822640abe15561a36/> ignore notebook
- - <csr-id-285db7d2c044de140ed550bbe2bf617233b6f55e/> sync lock with branch
- - <csr-id-17b8cb6642bbee5f0e2813515d8256516dccb48d/> sync lock with branch
+## 0.4.1 (2024-03-20)
 
 ### Chore
 
+ - <csr-id-61967b45e2427eafdba6700c3aa4151ca4ba17c1/> make test data larger again since I remove the whole dir from cargo publish
+ - <csr-id-93de92f6dbe3b8d5e596967f002d19ef0cd30458/> make test data larger again since I remove the whole dir from cargo publish
+ - <csr-id-3a47fa8f33664c37c5ae9283b376360b7dff914d/> make test data larger again since I remove the whole dir from cargo publish
+ - <csr-id-0a9ab3f816b0f52b8519b42b407577528dd14b19/> make test data larger again since I remove the whole dir from cargo publish
  - <csr-id-0b8f6a299120760452091ee3f14a4442d3876637/> make cargo publish smaller
-
-### Chore
-
  - <csr-id-2be96e24685037d23d7b9f1a8a4e18e53c5dda4a/> make cargo publish smaller
-
-### Chore
-
  - <csr-id-8a581721e0f45b6d6e774b38f7201142bd1f9eba/> make cargo publish smaller
-
-### Chore
-
  - <csr-id-1d7de118fbf56e6fbaa5e895f3ce0e1931c8f1be/> make cargo publish smaller
  - <csr-id-9a96cb31a28c25cbcd3f01a87b6f976071b0899e/> make cargo publish smaller
-
-### Chore
-
  - <csr-id-cbdda1a80fd3a06472b4ef3123949b5d1afa46ad/> make test data smaller
+ - <csr-id-212b2c97b6e796aba879c92822640abe15561a36/> ignore notebook
+ - <csr-id-285db7d2c044de140ed550bbe2bf617233b6f55e/> sync lock with branch
+ - <csr-id-17b8cb6642bbee5f0e2813515d8256516dccb48d/> sync lock with branch
 
 ### New Features
 
@@ -68,9 +47,9 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht
 
 <csr-read-only-do-not-edit/>
 
- - 18 commits contributed to the release over the course of 7 calendar days.
+ - 23 commits contributed to the release over the course of 7 calendar days.
  - 20 days passed between releases.
- - 10 commits were understood as [conventional](https://www.conventionalcommits.org).
+ - 14 commits were understood as [conventional](https://www.conventionalcommits.org).
  - 2 unique issues were worked on: [#43](https://github.com/fiberseq/fibertools-rs/issues/43), [#46](https://github.com/fiberseq/fibertools-rs/issues/46)
 
 ### Commit Details
@@ -84,6 +63,11 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht
  * **[#46](https://github.com/fiberseq/fibertools-rs/issues/46)**
     - Convert pytorch models to onnx to allow more backends ([`547b815`](https://github.com/fiberseq/fibertools-rs/commit/547b8150f9159b41985dc59b77b254f148b200b0))
  * **Uncategorized**
+    - Make test data larger again since I remove the whole dir from cargo publish ([`61967b4`](https://github.com/fiberseq/fibertools-rs/commit/61967b45e2427eafdba6700c3aa4151ca4ba17c1))
+    - Make test data larger again since I remove the whole dir from cargo publish ([`93de92f`](https://github.com/fiberseq/fibertools-rs/commit/93de92f6dbe3b8d5e596967f002d19ef0cd30458))
+    - Make test data larger again since I remove the whole dir from cargo publish ([`3a47fa8`](https://github.com/fiberseq/fibertools-rs/commit/3a47fa8f33664c37c5ae9283b376360b7dff914d))
+    - Make test data larger again since I remove the whole dir from cargo publish ([`0a9ab3f`](https://github.com/fiberseq/fibertools-rs/commit/0a9ab3f816b0f52b8519b42b407577528dd14b19))
+    - Release fibertools-rs v0.4.0 ([`5f5fac5`](https://github.com/fiberseq/fibertools-rs/commit/5f5fac5c1336cba6d59dbeda464f34f8655e4070))
     - Release fibertools-rs v0.4.0 ([`01748de`](https://github.com/fiberseq/fibertools-rs/commit/01748de0fcaf07e67ecf330615389c3d29c7e9fe))
     - Make cargo publish smaller ([`0b8f6a2`](https://github.com/fiberseq/fibertools-rs/commit/0b8f6a299120760452091ee3f14a4442d3876637))
     - Release fibertools-rs v0.4.0 ([`3656e4b`](https://github.com/fiberseq/fibertools-rs/commit/3656e4b9ce3a0c3e7287f0abe04af72c608ecd98))
@@ -102,6 +86,65 @@ and the project tries but probably doesn't to adhere to [Semantic Versioning](ht
     - Sync lock with branch ([`17b8cb6`](https://github.com/fiberseq/fibertools-rs/commit/17b8cb6642bbee5f0e2813515d8256516dccb48d))
 </details>
 
+## 0.4.0 (2024-03-20)
+
+<csr-id-212b2c97b6e796aba879c92822640abe15561a36/>
+<csr-id-285db7d2c044de140ed550bbe2bf617233b6f55e/>
+<csr-id-17b8cb6642bbee5f0e2813515d8256516dccb48d/>
+<csr-id-cbdda1a80fd3a06472b4ef3123949b5d1afa46ad/>
+<csr-id-1d7de118fbf56e6fbaa5e895f3ce0e1931c8f1be/>
+<csr-id-9a96cb31a28c25cbcd3f01a87b6f976071b0899e/>
+<csr-id-8a581721e0f45b6d6e774b38f7201142bd1f9eba/>
+<csr-id-2be96e24685037d23d7b9f1a8a4e18e53c5dda4a/>
+<csr-id-0b8f6a299120760452091ee3f14a4442d3876637/>
+
+### Chore
+
+ - <csr-id-212b2c97b6e796aba879c92822640abe15561a36/> ignore notebook
+ - <csr-id-285db7d2c044de140ed550bbe2bf617233b6f55e/> sync lock with branch
+ - <csr-id-17b8cb6642bbee5f0e2813515d8256516dccb48d/> sync lock with branch
+
+### Chore
+
+ - <csr-id-0b8f6a299120760452091ee3f14a4442d3876637/> make cargo publish smaller
+
+### Chore
+
+ - <csr-id-2be96e24685037d23d7b9f1a8a4e18e53c5dda4a/> make cargo publish smaller
+
+### Chore
+
+ - <csr-id-8a581721e0f45b6d6e774b38f7201142bd1f9eba/> make cargo publish smaller
+
+### Chore
+
+ - <csr-id-1d7de118fbf56e6fbaa5e895f3ce0e1931c8f1be/> make cargo publish smaller
+ - <csr-id-9a96cb31a28c25cbcd3f01a87b6f976071b0899e/> make cargo publish smaller
+
+### Chore
+
+ - <csr-id-cbdda1a80fd3a06472b4ef3123949b5d1afa46ad/> make test data smaller
+
+### New Features
+
+ - <csr-id-547b8150f9159b41985dc59b77b254f148b200b0/> convert pytorch models to onnx to allow more backends
+   This PR uses onnx files instead of pytorch files and moves the backend
+   of m6a prediction to burn-rs instead of tch-rs.
+
+   This allows us to use other ML backends in addition to pytorch, which
+   means we can still run m6a prediction without the massive pytorch
+   libraries and get the same results at the cost of some performance.
+
+   I have also added tests for m6a predictions for each PacBio chemistry to
+   ensure that the number and quality of predictions are identical to
+   previous versions regardless of backend. Will also be a useful test in
+   the future.
+
+
+   I also add a lot of new functionality to pyft.
+
+   This will be the basis of ft v0.4.0 when merged.
+
 ## 0.3.9 (2024-02-28)
 
 <csr-id-b0b9b6b8b11c7bd6be8906294897723f3b9c7167/>